myRT

myRT report for GCA_003006175.1_ASM300617v1

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Seq: CP024429.1 Klebsiella pneumoniae strain DA48896 chromosome, complete genome (5394870 bp)
Overview 1 RT 1: 1338371-1345671 bp 2 RT 2: 2223677-2228560 bp 3 RT 3: 2743573-2748238 bp 4 RT 4: 5370326-5377160 bp Neighborhood of RT #1 [1338371, 1345706] PAS_like sulfatase_rSAM RVT-GII RVT-GII GIIM CsgD MFS_NepI_like Neighborhood of RT #2 [2223677, 2228562] umuC RVT-UG11 PRK09951 PRK15110 Neighborhood of RT #3 [2743573, 2748238] PRK15417 Arr-ms RVT-GII GIIM N6_acetyl_AAC6 Neighborhood of RT #4 [5370326, 5377162] Fes Sugarporin_N LamB RVT-GII GIIM PRK11115 pstB Feature: gene Location: 1338371-1340104 bp Feature: domain Description: PAS_like Location: 1338443-1339901 bp Feature: domain Description: PAS_like Location: 1 338443-1 339901 bp Feature: gene Location: 1340149-1341336 bp Feature: domain Description: sulfatase_rSAM Location: 1340224-1341262 bp Feature: domain Description: sulfatase_rSAM Location: 1 340224-1 341 262 bp Feature: gene Location: 1342315-1342752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342507-1342747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342507-1 342747 bp Feature: gene Location: 1342754-1343569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342757-1343132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342757-1 3431 32 bp Feature: domain Description: GIIM Note: maturase Location: 1343171-1343390 bp Feature: domain Description: GIIM Note: maturase Location: 1 3431 71 -1 343390 bp Feature: gene Location: 1343733-1344416 bp Feature: domain Description: CsgD Location: 1344210-1344375 bp Feature: domain Description: CsgD Location: 1 34421 0-1 344375 bp Feature: gene Location: 1344534-1345706 bp Feature: domain Description: MFS_NepI_like Location: 1344612-1345671 bp Feature: domain Description: MFS_NepI_like Location: 1 34461 2-1 345671 bp Feature: gene Location: 2223677-2224942 bp Feature: domain Description: umuC Location: 2223680-2224940 bp Feature: domain Description: umuC Location: 2223680-2224940 bp Feature: gene Location: 2225167-2225355 bp Feature: gene Location: 2225615-2226523 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2225888-2226344 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2225888-2226344 bp Feature: gene Location: 2226724-2227392 bp Feature: domain Description: PRK09951 Location: 2226727-2227390 bp Feature: domain Description: PRK09951 Location: 2226727-2227390 bp Feature: gene Location: 2227597-2228562 bp Feature: domain Description: PRK15110 Location: 2227600-2228560 bp Feature: domain Description: PRK1 51 1 0 Location: 2227600-2228560 bp Feature: gene Location: 2743573-2744586 bp Feature: domain Description: PRK15417 Location: 2743576-2744584 bp Feature: domain Description: PRK1 541 7 Location: 2743576-2744584 bp Feature: gene Location: 2744759-2745211 bp Feature: domain Description: Arr-ms Location: 2744819-2745125 bp Feature: domain Description: Arr-ms Location: 274481 9-27451 25 bp Feature: gene Location: 2745292-2746545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2745484-2746108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2745484-27461 08 bp Feature: domain Description: GIIM Note: maturase Location: 2746147-2746366 bp Feature: domain Description: GIIM Note: maturase Location: 27461 47-2746366 bp Feature: gene Location: 2747266-2747820 bp Feature: domain Description: N6_acetyl_AAC6 Location: 2747269-2747818 bp Feature: domain Description: N6_acetyl_AAC6 Location: 2747269-274781 8 bp Feature: gene Location: 2747813-2748238 bp Feature: gene Location: 5370326-5371492 bp Feature: domain Description: Fes Location: 5370578-5371490 bp Feature: domain Description: Fes Location: 5370578-5371 490 bp Feature: gene Location: 5371531-5373165 bp Feature: domain Description: Sugarporin_N Location: 5371537-5371702 bp Feature: domain Description: Sugarporin_N Location: 5371 537-5371 702 bp Feature: domain Description: LamB Location: 5371852-5373163 bp Feature: domain Description: LamB Location: 5371 852-53731 63 bp Feature: gene Location: 5373361-5374614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5373553-5374177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5373553-53741 77 bp Feature: domain Description: GIIM Note: maturase Location: 5374216-5374435 bp Feature: domain Description: GIIM Note: maturase Location: 537421 6-5374435 bp Feature: gene Location: 5375613-5376338 bp Feature: domain Description: PRK11115 Location: 5375616-5376318 bp Feature: domain Description: PRK1 1 1 1 5 Location: 537561 6-537631 8 bp Feature: gene Location: 5376389-5377162 bp Feature: domain Description: pstB Location: 5376395-5377160 bp Feature: domain Description: pstB Location: 5376395-53771 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_like (cd16025), sulfatase_rSAM (TIGR03942), RVT-GII, GIIM (pfam08388), CsgD (COG2771), MFS_NepI_like (cd17324), umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)
PRK15417 (integron integrase), Arr-ms (pfam12120), N6_acetyl_AAC6 (TIGR04431), Fes (COG2382), Sugarporin_N (pfam11471), LamB (smart00281), PRK11115 (phosphate signaling complex protein PhoU), pstB (PRK10744)

Seq: CP024430.1 Klebsiella pneumoniae strain DA48896 plasmid p48896_1, complete sequence (131243 bp)
Overview 1 RT 1: 31121-35563 bp 2 RT 2: 54458-59499 bp 3 RT 3: 117529-121727 bp Neighborhood of RT #1 [31121, 35565] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Neighborhood of RT #2 [54458, 59525] Rve RVT-GII GIIM PRK13746 DHFR_1 Neighborhood of RT #3 [117529, 121729] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 31121-32392 bp Feature: domain Description: umuC Location: 31124-32384 bp Feature: domain Description: umuC Location: 3112 4-32 384 bp Feature: gene Location: 32392-33204 bp Feature: domain Description: PRK10276 Location: 32824-33187 bp Feature: domain Description: PRK102 76 Location: 32 82 4-33187 bp Feature: gene Location: 33229-34716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33634-34324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33634-3432 4 bp Feature: gene Location: 34868-35143 bp Feature: domain Description: InsA Location: 34871-35135 bp Feature: domain Description: InsA Location: 34871-35135 bp Feature: gene Location: 35062-35565 bp Feature: domain Description: DDE_Tnp_IS1 Location: 35173-35563 bp Feature: domain Description: DDE_Tnp_IS1 Location: 35173-35563 bp Feature: gene Location: 54458-55252 bp Feature: domain Description: Rve Location: 54509-55127 bp Feature: domain Description: Rve Location: 54509-5512 7 bp Feature: gene Location: 55251-55685 bp Feature: gene Location: 56398-57753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56692-57316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56692 -57316 bp Feature: domain Description: GIIM Note: maturase Location: 57355-57574 bp Feature: domain Description: GIIM Note: maturase Location: 57355-57574 bp Feature: gene Location: 57829-58620 bp Feature: domain Description: PRK13746 Location: 57832-58612 bp Feature: domain Description: PRK13746 Location: 57832 -58612 bp Feature: gene Location: 59028-59525 bp Feature: domain Description: DHFR_1 Location: 59052-59499 bp Feature: domain Description: DHFR_1 Location: 59052 -59499 bp Feature: gene Location: 117529-117786 bp Feature: gene Location: 117817-118092 bp Feature: gene Location: 118666-120333 bp Feature: domain Description: RVT_N Location: 118714-118951 bp Feature: domain Description: RVT_N Location: 118714-118951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119002-119644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119002 -119644 bp Feature: domain Description: GIIM Note: maturase Location: 119695-119929 bp Feature: domain Description: GIIM Note: maturase Location: 119695-11992 9 bp Feature: domain Description: HNHc Note: nucleases Location: 120139-120298 bp Feature: domain Description: HNHc Note: nucleases Location: 12 0139-12 02 98 bp Feature: gene Location: 120835-121257 bp Feature: domain Description: DUF1380 Location: 120838-121135 bp Feature: domain Description: DUF1380 Location: 12 0838-12 1135 bp Feature: gene Location: 121304-121729 bp Feature: domain Description: Antirestrict Location: 121439-121727 bp Feature: domain Description: Antirestrict Location: 12 1439-12 172 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400), Rve (COG3316), GIIM (pfam08388), PRK13746 (aminoglycoside resistance protein; Provisional), DHFR_1 (pfam00186), RVT_N (pfam13655)
HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)

Seq: CP024431.1 Klebsiella pneumoniae strain DA48896 plasmid p48896_2, complete sequence (114815 bp)
Overview 1 RT 1: 79835-86150 bp Neighborhood of RT #1 [79835, 86218] N6_acetyl_AAC6 RVT-GII GIIM HsdM DUF262 DUF1524 Feature: gene Location: 79835-80068 bp Feature: gene Location: 80156-80710 bp Feature: domain Description: N6_acetyl_AAC6 Location: 80159-80708 bp Feature: domain Description: N6_acetyl_AAC6 Location: 80159-80708 bp Feature: gene Location: 81329-82684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81623-82247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81623 -82247 bp Feature: domain Description: GIIM Note: maturase Location: 82286-82505 bp Feature: domain Description: GIIM Note: maturase Location: 82286-82505 bp Feature: gene Location: 82731-84476 bp Feature: domain Description: HsdM Location: 82761-84396 bp Feature: domain Description: HsdM Location: 82761-843 96 bp Feature: gene Location: 84488-86218 bp Feature: domain Description: DUF262 Location: 84524-85181 bp Feature: domain Description: DUF262 Location: 84524-85181 bp Feature: domain Description: DUF1524 Location: 85781-86150 bp Feature: domain Description: DUF1524 Location: 85781-86150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_acetyl_AAC6 (TIGR04431), RVT-GII, GIIM (pfam08388), HsdM (COG0286), DUF262 (pfam03235), DUF1524 (pfam07510)