myRT

myRT report for GCA_003010495.1_ASM301049v1

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Seq: CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome (2478942 bp)
Overview 1 RT 1: 216759-221427 bp 2 RT 2: 879337-883083 bp 3 RT 3: 1038948-1048279 bp 4 RT 4: 1051505-1056777 bp 5 RT 5: 1201070-1207606 bp 6 RT 6: 1515805-1518485 bp 7 RT 7: 1592611-1598056 bp 8 RT 8: 1666063-1673916 bp 9 RT 9: 1724072-1732547 bp 10 RT 10: 2115345-2121104 bp Neighborhood of RT #1 [216759, 221427] RutF tspaseT_teng_N InsQ RVT-GII GIIM Neighborhood of RT #2 [879337, 883097] RVT-GII GIIM Polbeta NTase_sub_bind Neighborhood of RT #3 [1038948, 1048305] PRK05479 CstA RVT-GII GIIM CstA GlyDH-like Neighborhood of RT #4 [1051505, 1056788] Pta RVT-GII GIIM COG2509 Neighborhood of RT #5 [1201070, 1208545] MATE_MurJ_like PRK15057 RVT-UG2 HNHc Neighborhood of RT #6 [1515805, 1518511] Avd_like RVT-DGRs Phage_holin_4_1 MurNAc-LAA Neighborhood of RT #7 [1592611, 1598082] TlpA_like_family HTH_YyaN RVT-GII GIIM PRK13628 prismane_assoc Neighborhood of RT #8 [1666063, 1673954] TyrB PLN02688 RVT-GII GIIM Lactate_perm glcD Neighborhood of RT #9 [1724072, 1732585] AlsT ileS RVT-GII GIIM COG5495 panB Neighborhood of RT #10 [2115345, 2121104] PRK13505 FTCD_C RVT-GII GIIM S2P-M50_like_1 Feature: gene Location: 216759-217310 bp Ori: AVO73661.1 Feature: domain Description: RutF Location: 216780-217257 bp Feature: domain Description: RutF Location: 21 6780-21 7257 bp Feature: gene Location: 217530-218756 bp Ori: AVO73662.1 Feature: domain Description: tspaseT_teng_N Location: 217551-217755 bp Feature: domain Description: tspaseT_teng_N Location: 21 7551 -21 7755 bp Feature: domain Description: InsQ Location: 218004-218700 bp Feature: domain Description: InsQ Location: 21 8004-21 8700 bp Feature: gene Location: 219029-220441 bp Ori: AVO73663.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219380-219998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9380-21 9998 bp Feature: domain Description: GIIM Note: maturase Location: 220055-220280 bp Feature: domain Description: GIIM Note: maturase Location: 220055-220280 bp Feature: gene Location: 221101-221295 bp Feature: gene Location: 221302-221427 bp Feature: gene Location: 879337-879633 bp Feature: gene Location: 879662-880279 bp Feature: gene Location: 880545-881957 bp Ori: AVO74190.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880896-881514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880896-881 51 4 bp Feature: domain Description: GIIM Note: maturase Location: 881571-881796 bp Feature: domain Description: GIIM Note: maturase Location: 881 571 -881 796 bp Feature: gene Location: 882437-882721 bp Ori: AVO74191.1 Feature: domain Description: Polbeta Location: 882470-882716 bp Feature: domain Description: Polbeta Location: 882470-88271 6 bp Feature: gene Location: 882708-883097 bp Ori: AVO74192.1 Feature: domain Description: NTase_sub_bind Location: 882717-883083 bp Feature: domain Description: NTase_sub_bind Location: 88271 7-883083 bp Feature: gene Location: 1038948-1039958 bp Ori: AVO74315.1 Feature: domain Description: PRK05479 Location: 1038951-1039938 bp Feature: domain Description: PRK05479 Location: 1 038951 -1 039938 bp Feature: gene Location: 1040682-1042559 bp Ori: AVO74316.1 Feature: domain Description: CstA Location: 1040685-1042443 bp Feature: domain Description: CstA Location: 1 040685-1 042443 bp Feature: gene Location: 1043030-1044442 bp Ori: AVO74317.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043381-1043999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 043381 -1 043999 bp Feature: domain Description: GIIM Note: maturase Location: 1044056-1044281 bp Feature: domain Description: GIIM Note: maturase Location: 1 044056-1 044281 bp Feature: gene Location: 1044897-1046774 bp Ori: AVO74318.1 Feature: domain Description: CstA Location: 1044900-1046658 bp Feature: domain Description: CstA Location: 1 044900-1 046658 bp Feature: gene Location: 1047208-1048305 bp Ori: AVO74319.1 Feature: domain Description: GlyDH-like Location: 1047238-1048279 bp Feature: domain Description: GlyDH-like Location: 1 047238-1 048279 bp Feature: gene Location: 1051505-1052542 bp Ori: AVO74322.1 Gene: pta Feature: domain Description: Pta Location: 1051514-1052504 bp Feature: domain Description: Pta Location: 1 051 51 4-1 052504 bp Feature: gene Location: 1052499-1052747 bp Feature: gene Location: 1053006-1054418 bp Ori: AVO74324.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053357-1053975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 053357-1 053975 bp Feature: domain Description: GIIM Note: maturase Location: 1054032-1054257 bp Feature: domain Description: GIIM Note: maturase Location: 1 054032-1 054257 bp Feature: gene Location: 1054731-1055159 bp Feature: gene Location: 1055400-1056788 bp Ori: AVO74326.1 Feature: domain Description: COG2509 Location: 1055415-1056777 bp Feature: domain Description: COG2509 Location: 1 05541 5-1 056777 bp Feature: gene Location: 1201070-1202587 bp Ori: AVO74465.1 Gene: mviN Feature: domain Description: MATE_MurJ_like Location: 1201115-1202348 bp Feature: domain Description: MATE_MurJ_like Location: 1 201 1 1 5-1 202348 bp Feature: gene Location: 1202652-1203884 bp Ori: AVO74466.1 Feature: domain Description: PRK15057 Location: 1202655-1203882 bp Feature: domain Description: PRK1 5057 Location: 1 202655-1 203882 bp Feature: gene Location: 1204892-1206298 bp Ori: AVO74467.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1205093-1205984 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 205093-1 205984 bp Feature: gene Location: 1206358-1206708 bp Feature: gene Location: 1207402-1208545 bp Feature: domain Description: HNHc Note: nucleases Location: 1207432-1207606 bp Feature: domain Description: HNHc Note: nucleases Location: 1 207432-1 207606 bp Feature: gene Location: 1515805-1516104 bp Ori: AVO75612.1 Feature: domain Description: Avd_like Location: 1515811-1516090 bp Feature: domain Description: Avd_like Location: 1 51 581 1 -1 51 6090 bp Feature: gene Location: 1516038-1516304 bp Feature: gene Location: 1516426-1517502 bp Ori: AVO74742.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1516636-1517278 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 51 6636-1 51 7278 bp Feature: gene Location: 1517502-1517945 bp Ori: AVO75613.1 Feature: domain Description: Phage_holin_4_1 Location: 1517595-1517925 bp Feature: domain Description: Phage_holin_4_1 Location: 1 51 7595-1 51 7925 bp Feature: gene Location: 1517942-1518511 bp Ori: AVO74743.1 Feature: domain Description: MurNAc-LAA Location: 1517948-1518485 bp Feature: domain Description: MurNAc-LAA Location: 1 51 7948-1 51 8485 bp Feature: gene Location: 1592611-1593156 bp Ori: AVO74819.1 Feature: domain Description: TlpA_like_family Location: 1592794-1593091 bp Feature: domain Description: TlpA_like_family Location: 1 592794-1 593091 bp Feature: gene Location: 1593494-1593847 bp Ori: AVO74820.1 Feature: domain Description: HTH_YyaN Location: 1593500-1593833 bp Feature: domain Description: HTH_YyaN Location: 1 593500-1 593833 bp Feature: gene Location: 1594517-1595929 bp Ori: AVO74821.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1594868-1595486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 594868-1 595486 bp Feature: domain Description: GIIM Note: maturase Location: 1595543-1595768 bp Feature: domain Description: GIIM Note: maturase Location: 1 595543-1 595768 bp Feature: gene Location: 1596324-1597568 bp Ori: AVO74822.1 Feature: domain Description: PRK13628 Location: 1596330-1597515 bp Feature: domain Description: PRK1 3628 Location: 1 596330-1 59751 5 bp Feature: gene Location: 1597873-1598082 bp Ori: AVO74823.1 Feature: domain Description: prismane_assoc Location: 1597885-1598056 bp Feature: domain Description: prismane_assoc Location: 1 597885-1 598056 bp Feature: gene Location: 1666063-1667316 bp Ori: AVO74880.1 Feature: domain Description: TyrB Location: 1666111-1667287 bp Feature: domain Description: TyrB Location: 1 6661 1 1 -1 667287 bp Feature: gene Location: 1667343-1668143 bp Ori: AVO74881.1 Feature: domain Description: PLN02688 Location: 1667355-1668138 bp Feature: domain Description: PLN02688 Location: 1 667355-1 6681 38 bp Feature: gene Location: 1668600-1670012 bp Ori: AVO74882.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668951-1669569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 668951 -1 669569 bp Feature: domain Description: GIIM Note: maturase Location: 1669626-1669851 bp Feature: domain Description: GIIM Note: maturase Location: 1 669626-1 669851 bp Feature: gene Location: 1670508-1672055 bp Ori: AVO74883.1 Feature: domain Description: Lactate_perm Location: 1670517-1672023 bp Feature: domain Description: Lactate_perm Location: 1 67051 7-1 672023 bp Feature: gene Location: 1672533-1673954 bp Ori: AVO74884.1 Feature: domain Description: glcD Location: 1672683-1673916 bp Feature: domain Description: glcD Location: 1 672683-1 67391 6 bp Feature: gene Location: 1724072-1725478 bp Ori: AVO74928.1 Feature: domain Description: AlsT Location: 1724075-1725416 bp Feature: domain Description: AlsT Location: 1 724075-1 72541 6 bp Feature: gene Location: 1725800-1728595 bp Ori: AVO74929.1 Feature: domain Description: ileS Location: 1725803-1728590 bp Feature: domain Description: ileS Location: 1 725803-1 728590 bp Feature: gene Location: 1729051-1730463 bp Ori: AVO74930.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1729402-1730020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 729402-1 730020 bp Feature: domain Description: GIIM Note: maturase Location: 1730077-1730302 bp Feature: domain Description: GIIM Note: maturase Location: 1 730077-1 730302 bp Feature: gene Location: 1730881-1731777 bp Ori: AVO74931.1 Feature: domain Description: COG5495 Location: 1730884-1731613 bp Feature: domain Description: COG5495 Location: 1 730884-1 731 61 3 bp Feature: gene Location: 1731746-1732585 bp Ori: AVO74932.1 Gene: panB Feature: domain Description: panB Location: 1731761-1732547 bp Feature: domain Description: panB Location: 1 731 761 -1 732547 bp Feature: gene Location: 2115345-2117024 bp Ori: AVO75253.1 Feature: domain Description: PRK13505 Location: 2115357-2117022 bp Feature: domain Description: PRK1 3505 Location: 21 1 5357-21 1 7022 bp Feature: gene Location: 2117026-2117646 bp Ori: AVO75254.1 Feature: domain Description: FTCD_C Location: 2117062-2117584 bp Feature: domain Description: FTCD_C Location: 21 1 7062-21 1 7584 bp Feature: gene Location: 2118093-2119505 bp Ori: AVO75255.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2118444-2119062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 8444-21 1 9062 bp Feature: domain Description: GIIM Note: maturase Location: 2119119-2119344 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 91 1 9-21 1 9344 bp Feature: gene Location: 2119917-2120543 bp Ori: AVO75256.1 Feature: domain Description: S2P-M50_like_1 Location: 2119944-2120472 bp Feature: domain Description: S2P-M50_like_1 Location: 21 1 9944-21 20472 bp Feature: gene Location: 2120559-2121104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), tspaseT_teng_N (TIGR01765), InsQ (COG0675), RVT-GII, GIIM (pfam08388), Polbeta (pfam18765), NTase_sub_bind (pfam08780), PRK05479 (ketol-acid reductoisomerase; Provisional), CstA (pfam02554), GlyDH-like (cd08550)
Pta (COG0280), COG2509 (FAD-dependent dehydrogenase ), MATE_MurJ_like (cd13123), PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), RVT-UG2, HNHc (smart00507), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), MurNAc-LAA (cl02713)
TlpA_like_family (cd02966), HTH_YyaN (cd01109), PRK13628 (serine/threonine transporter SstT; Provisional), prismane_assoc (TIGR03980), TyrB (COG1448), PLN02688 (pyrroline-5-carboxylate reductase), Lactate_perm (pfam02652), glcD (TIGR00387), AlsT (COG1115), ileS (TIGR00392)
COG5495 (Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains ), panB (TIGR00222), PRK13505 (formate--tetrahydrofolate ligase; Provisional), FTCD_C (pfam04961), S2P-M50_like_1 (cd06158)