myRT

myRT report for GCA_003013205.1_ASM301320v1

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Seq: CP027106.1 Escherichia coli strain RM14721 plasmid pRM14721, complete sequence (106432 bp)
Overview 1 RT 1: 988-4355 bp 2 RT 2: 50078-54671 bp Neighborhood of RT #1 [988, 4752] Sigma70_r4 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [50078, 54671] DUF1281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 988-1227 bp Feature: domain Description: Sigma70_r4 Location: 1021-1129 bp Feature: domain Description: Sigma70_r4 Location: 1 021 -1 1 29 bp Feature: gene Location: 1269-1742 bp Feature: domain Description: PHA02517 Location: 1275-1740 bp Feature: domain Description: PHA0251 7 Location: 1 275-1 740 bp Feature: gene Location: 1832-3355 bp Ori: AVP32102.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105-2837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 05-2837 bp Feature: domain Description: GIIM Note: maturase Location: 2912-3110 bp Feature: domain Description: GIIM Note: maturase Location: 291 2-31 1 0 bp Feature: gene Location: 3649-4020 bp Feature: gene Location: 4013-4752 bp Feature: domain Description: InsE Location: 4016-4355 bp Feature: domain Description: InsE Location: 401 6-4355 bp Feature: gene Location: 50078-50978 bp Feature: domain Description: DUF1281 Location: 50147-50525 bp Feature: domain Description: DUF1 281 Location: 501 47-50525 bp Feature: gene Location: 50982-51287 bp Feature: gene Location: 51516-53216 bp Ori: AVP32136.1 Gene: ltrA Feature: domain Description: RVT_N Location: 51570-51813 bp Feature: domain Description: RVT_N Location: 51 570-51 81 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51858-52494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 858-52494 bp Feature: domain Description: GIIM Note: maturase Location: 52545-52779 bp Feature: domain Description: GIIM Note: maturase Location: 52545-52779 bp Feature: domain Description: HNHc Note: nucleases Location: 53010-53160 bp Feature: domain Description: HNHc Note: nucleases Location: 5301 0-531 60 bp Feature: gene Location: 53796-54449 bp Ori: AVP32137.1 Feature: domain Description: PRK13699 Location: 53841-54447 bp Feature: domain Description: PRK1 3699 Location: 53841 -54447 bp Feature: gene Location: 54450-54671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4 (pfam04545), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), DUF1281 (pfam06924), RVT_N (pfam13655), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: CP027105.1 Escherichia coli strain RM14721 chromosome, complete genome (4620018 bp)
Overview 1 RT 1: 2810184-2815076 bp 2 RT 2: 3802510-3807218 bp Neighborhood of RT #1 [2810184, 2815485] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [3802510, 3807615] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 2810184-2812043 bp Feature: domain Description: LysM Location: 2810424-2810562 bp Feature: domain Description: LysM Location: 2 81042 4-2 810562 bp Feature: domain Description: IAT_beta Location: 2810643-2811468 bp Feature: domain Description: IAT_beta Location: 2 810643-2 811468 bp Feature: domain Description: PRK15318 Location: 2811669-2811792 bp Feature: domain Description: PRK15318 Location: 2 811669-2 811792 bp Feature: domain Description: Invasin_D3 Location: 2811807-2812044 bp Feature: domain Description: Invasin_D3 Location: 2 811807-2 812 044 bp Feature: gene Location: 2812080-2812538 bp Feature: domain Description: PHA02517 Location: 2812083-2812530 bp Feature: domain Description: PHA02 517 Location: 2 812 083-2 812 530 bp Feature: gene Location: 2812619-2814142 bp Ori: AVP30287.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2812892-2813624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 812 892 -2 81362 4 bp Feature: domain Description: GIIM Note: maturase Location: 2813699-2813897 bp Feature: domain Description: GIIM Note: maturase Location: 2 813699-2 813897 bp Feature: gene Location: 2814436-2814807 bp Feature: gene Location: 2814800-2815485 bp Feature: domain Description: InsE Location: 2814812-2815076 bp Feature: domain Description: InsE Location: 2 814812 -2 815076 bp Feature: gene Location: 3802510-3803981 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3802627-3802840 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3802 62 7-3802 840 bp Feature: domain Description: zf-IS66 Location: 3802867-3802993 bp Feature: domain Description: zf-IS66 Location: 3802 867-3802 993 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3803038-3803803 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3803038-3803803 bp Feature: gene Location: 3804132-3804605 bp Feature: domain Description: PHA02517 Location: 3804138-3804603 bp Feature: domain Description: PHA02 517 Location: 3804138-3804603 bp Feature: gene Location: 3804695-3806218 bp Ori: AVP31139.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804968-3805700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804968-3805700 bp Feature: domain Description: GIIM Note: maturase Location: 3805775-3805973 bp Feature: domain Description: GIIM Note: maturase Location: 3805775-3805973 bp Feature: gene Location: 3806512-3806883 bp Feature: gene Location: 3806876-3807615 bp Feature: domain Description: InsE Location: 3806879-3807218 bp Feature: domain Description: InsE Location: 3806879-38072 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050)