myRT

myRT report for GCA_003018335.1_ASM301833v1

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Seq: CP027579.1 Escherichia coli strain 2013C-4282 chromosome, complete genome (5030044 bp)
Overview 1 RT 1: 1083443-1087996 bp 2 RT 2: 2063202-2069851 bp 3 RT 3: 2454481-2463150 bp 4 RT 4: 3314601-3323192 bp Neighborhood of RT #1 [1083443, 1087996] YhhI YhhI YhhI RVT-GII GIIM Neighborhood of RT #2 [2063202, 2069877] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI nfrB Neighborhood of RT #3 [2454481, 2463497] PRK10438 YhhI YhhI YhhI RVT-GII GIIM RhsA RHS_repeat RhsA Neighborhood of RT #4 [3314601, 3323269] PRK10030 YhhI YhhI YhhI RVT-GII GIIM PAAR_2 RHS_repeat RhsA RhsA Feature: gene Location: 1083443-1084078 bp Feature: gene Location: 1084293-1085429 bp Feature: domain Description: YhhI Location: 1084296-1084659 bp Feature: domain Description: YhhI Location: 1 084296-1 084659 bp Feature: domain Description: YhhI Location: 1084716-1085070 bp Feature: domain Description: YhhI Location: 1 08471 6-1 085070 bp Feature: domain Description: YhhI Location: 1085091-1085331 bp Feature: domain Description: YhhI Location: 1 085091 -1 085331 bp Feature: gene Location: 1085637-1087136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086090-1086747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 086090-1 086747 bp Feature: domain Description: GIIM Note: maturase Location: 1086837-1087044 bp Feature: domain Description: GIIM Note: maturase Location: 1 086837-1 087044 bp Feature: gene Location: 1087331-1087555 bp Feature: gene Location: 1087598-1087996 bp Feature: gene Location: 2063202-2063342 bp Feature: gene Location: 2063592-2064725 bp Feature: domain Description: YhhI Location: 2063595-2063958 bp Feature: domain Description: YhhI Location: 2063595-2063958 bp Feature: domain Description: YhhI Location: 2064015-2064369 bp Feature: domain Description: YhhI Location: 206401 5-2064369 bp Feature: domain Description: YhhI Location: 2064387-2064624 bp Feature: domain Description: YhhI Location: 2064387-2064624 bp Feature: gene Location: 2064801-2066300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065254-2065911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065254-206591 1 bp Feature: domain Description: GIIM Note: maturase Location: 2066001-2066208 bp Feature: domain Description: GIIM Note: maturase Location: 2066001 -2066208 bp Feature: gene Location: 2066495-2067382 bp Feature: domain Description: YhhI Location: 2066669-2067023 bp Feature: domain Description: YhhI Location: 2066669-2067023 bp Feature: domain Description: YhhI Location: 2067041-2067290 bp Feature: domain Description: YhhI Location: 2067041 -2067290 bp Feature: gene Location: 2067640-2069877 bp Feature: domain Description: nfrB Location: 2067664-2069851 bp Feature: domain Description: nfrB Location: 2067664-2069851 bp Feature: gene Location: 2454481-2455251 bp Feature: domain Description: PRK10438 Location: 2454484-2455246 bp Feature: domain Description: PRK1 0438 Location: 2454484-2455246 bp Feature: gene Location: 2455292-2456365 bp Feature: domain Description: YhhI Location: 2455295-2455595 bp Feature: domain Description: YhhI Location: 2455295-2455595 bp Feature: domain Description: YhhI Location: 2455652-2456006 bp Feature: domain Description: YhhI Location: 2455652-2456006 bp Feature: domain Description: YhhI Location: 2456027-2456267 bp Feature: domain Description: YhhI Location: 2456027-2456267 bp Feature: gene Location: 2456637-2458136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457090-2457747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457090-2457747 bp Feature: domain Description: GIIM Note: maturase Location: 2457837-2458044 bp Feature: domain Description: GIIM Note: maturase Location: 2457837-2458044 bp Feature: gene Location: 2458696-2459313 bp Feature: gene Location: 2459313-2463497 bp Feature: domain Description: RhsA Location: 2460279-2460747 bp Feature: domain Description: RhsA Location: 2460279-2460747 bp Feature: domain Description: RHS_repeat Location: 2460807-2460924 bp Feature: domain Description: RHS_repeat Location: 2460807-2460924 bp Feature: domain Description: RhsA Location: 2460945-2463150 bp Feature: domain Description: RhsA Location: 2460945-24631 50 bp Feature: gene Location: 3314601-3315209 bp Feature: domain Description: PRK10030 Location: 3314604-3315192 bp Feature: domain Description: PRK1 0030 Location: 331 4604-331 51 92 bp Feature: gene Location: 3315302-3316438 bp Feature: domain Description: YhhI Location: 3315305-3315668 bp Feature: domain Description: YhhI Location: 331 5305-331 5668 bp Feature: domain Description: YhhI Location: 3315725-3316079 bp Feature: domain Description: YhhI Location: 331 5725-331 6079 bp Feature: domain Description: YhhI Location: 3316100-3316340 bp Feature: domain Description: YhhI Location: 331 61 00-331 6340 bp Feature: gene Location: 3316646-3318145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3317099-3317756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 7099-331 7756 bp Feature: domain Description: GIIM Note: maturase Location: 3317846-3318053 bp Feature: domain Description: GIIM Note: maturase Location: 331 7846-331 8053 bp Feature: gene Location: 3318515-3318793 bp Feature: gene Location: 3319085-3323269 bp Feature: domain Description: PAAR_2 Location: 3319091-3319172 bp Feature: domain Description: PAAR_2 Location: 331 9091 -331 91 72 bp Feature: domain Description: RHS_repeat Location: 3320039-3320141 bp Feature: domain Description: RHS_repeat Location: 3320039-33201 41 bp Feature: domain Description: RhsA Location: 3320144-3320660 bp Feature: domain Description: RhsA Location: 33201 44-3320660 bp Feature: domain Description: RhsA Location: 3320690-3323192 bp Feature: domain Description: RhsA Location: 3320690-33231 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388), nfrB (PRK15489), PRK10438 (C-N hydrolase family amidase; Provisional), RhsA (COG3209), RHS_repeat (pfam05593), PRK10030 (YiiX family permuted papain-like enzyme), PAAR_2 (cd14738)

Seq: CP027581.1 Escherichia coli strain 2013C-4282 plasmid unnamed2, complete sequence (118822 bp)
Overview 1 RT 1: 63500-67138 bp Neighborhood of RT #1 [63500, 67138] DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc Feature: gene Location: 63500-64426 bp Feature: domain Description: DUF1281 Location: 63593-64121 bp Feature: domain Description: DUF12 81 Location: 63593-6412 1 bp Feature: domain Description: DUF1281_C Location: 64127-64367 bp Feature: domain Description: DUF12 81_C Location: 6412 7-64367 bp Feature: gene Location: 64430-64735 bp Feature: gene Location: 64965-66665 bp Feature: domain Description: RVT_N Location: 65019-65262 bp Feature: domain Description: RVT_N Location: 65019-652 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65307-65943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65307-65943 bp Feature: domain Description: GIIM Note: maturase Location: 65994-66228 bp Feature: domain Description: GIIM Note: maturase Location: 65994-662 2 8 bp Feature: domain Description: HNHc Note: nucleases Location: 66459-66609 bp Feature: domain Description: HNHc Note: nucleases Location: 66459-66609 bp Feature: gene Location: 66702-66830 bp Feature: gene Location: 66881-67138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)