myRT

myRT report for GCA_003018855.1_ASM301885v1

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Seq: CP027373.1 Escherichia coli strain 05-3629 chromosome, complete genome (4904151 bp)
Overview 1 RT 1: 3545409-3549884 bp 2 RT 2: 3863813-3866889 bp Neighborhood of RT #1 [3545409, 3549884] FimA PRK15284 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [3863813, 3866889] antidote_CC2985 DUF1508 DUF1508 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3545409-3545972 bp Feature: domain Description: FimA Location: 3545424-3545967 bp Feature: domain Description: FimA Location: 3545424-3545967 bp Feature: gene Location: 3546054-3547637 bp Feature: domain Description: PRK15284 Location: 3546057-3547632 bp Feature: domain Description: PRK1 5284 Location: 3546057-3547632 bp Feature: gene Location: 3547711-3549411 bp Feature: domain Description: RVT_N Location: 3547765-3548008 bp Feature: domain Description: RVT_N Location: 3547765-3548008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548053-3548689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548053-3548689 bp Feature: domain Description: GIIM Note: maturase Location: 3548740-3548974 bp Feature: domain Description: GIIM Note: maturase Location: 3548740-3548974 bp Feature: domain Description: HNHc Note: nucleases Location: 3549205-3549355 bp Feature: domain Description: HNHc Note: nucleases Location: 3549205-3549355 bp Feature: gene Location: 3549448-3549576 bp Feature: gene Location: 3549627-3549884 bp Feature: gene Location: 3863813-3864109 bp Feature: domain Description: antidote_CC2985 Location: 3863870-3864080 bp Feature: domain Description: antidote_CC2985 Location: 3863870-3864080 bp Feature: gene Location: 3864318-3864728 bp Feature: domain Description: DUF1508 Location: 3864429-3864567 bp Feature: domain Description: DUF1 508 Location: 3864429-3864567 bp Feature: domain Description: DUF1508 Location: 3864579-3864720 bp Feature: domain Description: DUF1 508 Location: 3864579-3864720 bp Feature: gene Location: 3864716-3866416 bp Feature: domain Description: RVT_N Location: 3864770-3865013 bp Feature: domain Description: RVT_N Location: 3864770-386501 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865058-3865694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865058-3865694 bp Feature: domain Description: GIIM Note: maturase Location: 3865745-3865979 bp Feature: domain Description: GIIM Note: maturase Location: 3865745-3865979 bp Feature: domain Description: HNHc Note: nucleases Location: 3866210-3866360 bp Feature: domain Description: HNHc Note: nucleases Location: 386621 0-3866360 bp Feature: gene Location: 3866453-3866581 bp Feature: gene Location: 3866632-3866889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimA (pfam16970), PRK15284 (putative fimbrial outer membrane usher protein StfC; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), antidote_CC2985 (TIGR02606), DUF1508 (pfam07411)

Seq: CP027374.1 Escherichia coli strain 05-3629 plasmid unnamed1, complete sequence (91648 bp)
Overview 1 RT 1: 74392-78184 bp Neighborhood of RT #1 [74392, 78184] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 74392-74661 bp Feature: gene Location: 75142-75282 bp Feature: gene Location: 75304-77028 bp Feature: domain Description: RVT_N Location: 75361-75598 bp Feature: domain Description: RVT_N Location: 75361-75598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75649-76297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75649-762 97 bp Feature: domain Description: YkfC Location: 76429-76585 bp Feature: domain Description: YkfC Location: 7642 9-76585 bp Feature: domain Description: HNHc Note: nucleases Location: 76813-76972 bp Feature: domain Description: HNHc Note: nucleases Location: 76813-76972 bp Feature: gene Location: 77105-78007 bp Feature: domain Description: DUF1281 Location: 77174-77702 bp Feature: domain Description: DUF12 81 Location: 77174-77702 bp Feature: domain Description: DUF1281_C Location: 77708-77948 bp Feature: domain Description: DUF12 81_C Location: 77708-77948 bp Feature: gene Location: 78011-78184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: CP027375.1 Escherichia coli strain 05-3629 plasmid unnamed2, complete sequence (118863 bp)
Overview 1 RT 1: 34321-37900 bp Neighborhood of RT #1 [34321, 37959] RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 34321-34578 bp Feature: gene Location: 34635-34769 bp Feature: gene Location: 34794-36494 bp Feature: domain Description: RVT_N Location: 34848-35091 bp Feature: domain Description: RVT_N Location: 3 4848-3 5091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35136-35772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 513 6-3 5772 bp Feature: domain Description: GIIM Note: maturase Location: 35823-36057 bp Feature: domain Description: GIIM Note: maturase Location: 3 5823 -3 6057 bp Feature: domain Description: HNHc Note: nucleases Location: 36288-36438 bp Feature: domain Description: HNHc Note: nucleases Location: 3 6288-3 643 8 bp Feature: gene Location: 36724-37029 bp Feature: gene Location: 37033-37959 bp Feature: domain Description: DUF1281 Location: 37126-37654 bp Feature: domain Description: DUF1281 Location: 3 7126-3 7654 bp Feature: domain Description: DUF1281_C Location: 37660-37900 bp Feature: domain Description: DUF1281_C Location: 3 7660-3 7900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)