myRT

myRT report for GCA_003019735.1_ASM301973v1

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Seq: CP020664.1 Microcystis sp. MC19 chromosome, complete genome (5020243 bp)
Overview 1 RT 1: 78716-84442 bp 2 RT 2: 617611-621195 bp 3 RT 3: 853568-860162 bp 4 RT 4: 1343898-1352853 bp 5 RT 5: 4269023-4273462 bp Neighborhood of RT #1 [78716, 84465] COG3380 RVT_N RVT-GII GIIM McrA YaaW RfaL Neighborhood of RT #2 [617611, 621350] Rhizobitoxine-FADS-like QOR2 RVT_N RVT-GII TPR TPR Neighborhood of RT #3 [853568, 860179] GT4_WcaC-like RVT_N RVT-GII GIIM McrA Delta6-FADS-like pgsA Neighborhood of RT #4 [1343898, 1352933] KOG0157 PLPDE_III_AR RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM McrA HNHc InsQ Neighborhood of RT #5 [4269023, 4273521] Uma2 RVT-CRISPR Cas_Cas1 HTH_23 HTH_33 DDE_3 Feature: gene Location: 78716-79660 bp Ori: AVQ69992.1 Feature: domain Description: COG3380 Location: 78737-79649 bp Feature: domain Description: COG3380 Location: 78737-79649 bp Feature: gene Location: 79811-80020 bp Feature: gene Location: 80404-82233 bp Feature: domain Description: RVT_N Location: 80455-80698 bp Feature: domain Description: RVT_N Location: 80455-80698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80743-81415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80743-81 41 5 bp Feature: domain Description: GIIM Note: maturase Location: 81514-81721 bp Feature: domain Description: GIIM Note: maturase Location: 81 51 4-81 721 bp Feature: domain Description: McrA Location: 81853-82120 bp Feature: domain Description: McrA Location: 81 853-821 20 bp Feature: gene Location: 82362-83189 bp Ori: AVQ69994.1 Feature: domain Description: YaaW Location: 82563-83181 bp Feature: domain Description: YaaW Location: 82563-831 81 bp Feature: gene Location: 83191-84465 bp Ori: AVQ69995.1 Feature: domain Description: RfaL Location: 83272-84442 bp Feature: domain Description: RfaL Location: 83272-84442 bp Feature: gene Location: 617611-618276 bp Ori: AVQ70475.1 Feature: domain Description: Rhizobitoxine-FADS-like Location: 617728-617902 bp Feature: domain Description: Rhizobitoxine-FADS-like Location: 61 7728-61 7902 bp Feature: gene Location: 618283-619296 bp Ori: AVQ70476.1 Feature: domain Description: QOR2 Location: 618322-619291 bp Feature: domain Description: QOR2 Location: 61 8322-61 9291 bp Feature: gene Location: 619451-619870 bp Feature: domain Description: RVT_N Location: 619475-619718 bp Feature: domain Description: RVT_N Location: 61 9475-61 971 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619763-619871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 9763-61 9871 bp Feature: gene Location: 619930-620259 bp Feature: gene Location: 620469-621350 bp Ori: AVQ70477.1 Feature: domain Description: TPR Location: 620625-620886 bp Feature: domain Description: TPR Location: 620625-620886 bp Feature: domain Description: TPR Location: 620913-621195 bp Feature: domain Description: TPR Location: 62091 3-621 1 95 bp Feature: gene Location: 853568-854824 bp Ori: AVQ74215.1 Feature: domain Description: GT4_WcaC-like Location: 853571-854807 bp Feature: domain Description: GT4_WcaC-like Location: 853571 -854807 bp Feature: gene Location: 854837-855031 bp Feature: gene Location: 856012-857838 bp Feature: domain Description: RVT_N Location: 856063-856306 bp Feature: domain Description: RVT_N Location: 856063-856306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856351-857020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856351 -857020 bp Feature: domain Description: GIIM Note: maturase Location: 857119-857326 bp Feature: domain Description: GIIM Note: maturase Location: 8571 1 9-857326 bp Feature: domain Description: McrA Location: 857485-857725 bp Feature: domain Description: McrA Location: 857485-857725 bp Feature: gene Location: 858329-859423 bp Ori: AVQ70668.1 Feature: domain Description: Delta6-FADS-like Location: 858527-859316 bp Feature: domain Description: Delta6-FADS-like Location: 858527-85931 6 bp Feature: gene Location: 859643-860179 bp Ori: AVQ70669.1 Feature: domain Description: pgsA Location: 859646-860162 bp Feature: domain Description: pgsA Location: 859646-8601 62 bp Feature: gene Location: 1343898-1345202 bp Ori: AVQ74246.1 Feature: domain Description: KOG0157 Location: 1343922-1345200 bp Feature: domain Description: KOG01 57 Location: 1 343922-1 345200 bp Feature: gene Location: 1345412-1346608 bp Ori: AVQ71085.1 Feature: domain Description: PLPDE_III_AR Location: 1345496-1346594 bp Feature: domain Description: PLPDE_III_AR Location: 1 345496-1 346594 bp Feature: gene Location: 1347353-1348855 bp Feature: domain Description: RVT_N Location: 1347413-1347659 bp Feature: domain Description: RVT_N Location: 1 34741 3-1 347659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1347701-1348370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 347701 -1 348370 bp Feature: domain Description: GIIM Note: maturase Location: 1348469-1348703 bp Feature: domain Description: GIIM Note: maturase Location: 1 348469-1 348703 bp Feature: gene Location: 1348960-1349169 bp Feature: gene Location: 1349553-1351382 bp Feature: domain Description: RVT_N Location: 1349604-1349847 bp Feature: domain Description: RVT_N Location: 1 349604-1 349847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349892-1350564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 349892-1 350564 bp Feature: domain Description: GIIM Note: maturase Location: 1350663-1350870 bp Feature: domain Description: GIIM Note: maturase Location: 1 350663-1 350870 bp Feature: domain Description: McrA Location: 1351002-1351269 bp Feature: domain Description: McrA Location: 1 351 002-1 351 269 bp Feature: gene Location: 1351463-1351717 bp Ori: AVQ74247.1 Feature: domain Description: HNHc Note: nucleases Location: 1351499-1351661 bp Feature: domain Description: HNHc Note: nucleases Location: 1 351 499-1 351 661 bp Feature: gene Location: 1351764-1352933 bp Ori: AVQ74248.1 Feature: domain Description: InsQ Location: 1351785-1352853 bp Feature: domain Description: InsQ Location: 1 351 785-1 352853 bp Feature: gene Location: 4269023-4269628 bp Ori: AVQ73529.1 Feature: domain Description: Uma2 Location: 4269056-4269608 bp Feature: domain Description: Uma2 Location: 4269056-4269608 bp Feature: gene Location: 4269901-4270527 bp Feature: gene Location: 4271009-4271986 bp Ori: AVQ73531.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4271216-4271822 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4271 21 6-4271 822 bp Feature: gene Location: 4272091-4272498 bp Ori: AVQ74408.1 Feature: domain Description: Cas_Cas1 Location: 4272103-4272481 bp Feature: domain Description: Cas_Cas1 Location: 42721 03-4272481 bp Feature: gene Location: 4272541-4273521 bp Feature: domain Description: HTH_23 Location: 4272616-4272721 bp Feature: domain Description: HTH_23 Location: 427261 6-4272721 bp Feature: domain Description: HTH_33 Location: 4272859-4273036 bp Feature: domain Description: HTH_33 Location: 4272859-4273036 bp Feature: domain Description: DDE_3 Location: 4273147-4273462 bp Feature: domain Description: DDE_3 Location: 42731 47-4273462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3380 (Predicted NAD/FAD-dependent oxidoreductase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YaaW (COG4735), RfaL (COG3307), Rhizobitoxine-FADS-like (cd03510), QOR2 (cd05286), TPR (smart00028)
GT4_WcaC-like (cd03825), Delta6-FADS-like (cd03506), pgsA (TIGR00560), KOG0157 (KOG0157, Cytochrome P450 CYP4/CYP19/CYP26 subfamilies ), PLPDE_III_AR (cd00430), HNHc (smart00507), InsQ (COG0675), Uma2 (pfam05685), RVT-CRISPR, Cas_Cas1 (pfam01867)
HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)