myRT

myRT report for GCA_003020685.1_ASM302068v1

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Seq: CP027497.1 Enterococcus faecium strain AUSMDU00004167 chromosome, complete genome (2883877 bp)
Overview 1 RT 1: 964637-969951 bp 2 RT 2: 2764758-2769798 bp Neighborhood of RT #1 [964637, 969962] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [2764758, 2769812] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 964637-964891 bp Feature: gene Location: 965147-966331 bp Feature: domain Description: HTH_XRE Location: 965177-965321 bp Feature: domain Description: HTH_XRE Location: 9651 77-965321 bp Feature: domain Description: Rol_Rep_N Location: 965354-965618 bp Feature: domain Description: Rol_Rep_N Location: 965354-96561 8 bp Feature: domain Description: Rep_trans Location: 965642-966254 bp Feature: domain Description: Rep_trans Location: 965642-966254 bp Feature: gene Location: 967211-969121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967544-968282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967544-968282 bp Feature: domain Description: HNHc Note: nucleases Location: 968837-969002 bp Feature: domain Description: HNHc Note: nucleases Location: 968837-969002 bp Feature: gene Location: 969309-969449 bp Feature: gene Location: 969462-969962 bp Feature: domain Description: ArdA Location: 969480-969951 bp Feature: domain Description: ArdA Location: 969480-969951 bp Feature: gene Location: 2764758-2764901 bp Feature: gene Location: 2764994-2766178 bp Feature: domain Description: HTH_XRE Location: 2765024-2765168 bp Feature: domain Description: HTH_XRE Location: 2765024-27651 68 bp Feature: domain Description: Rol_Rep_N Location: 2765201-2765465 bp Feature: domain Description: Rol_Rep_N Location: 2765201 -2765465 bp Feature: domain Description: Rep_trans Location: 2765489-2766101 bp Feature: domain Description: Rep_trans Location: 2765489-27661 01 bp Feature: gene Location: 2767058-2768968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2767391-2768129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2767391 -27681 29 bp Feature: domain Description: HNHc Note: nucleases Location: 2768684-2768849 bp Feature: domain Description: HNHc Note: nucleases Location: 2768684-2768849 bp Feature: gene Location: 2769156-2769296 bp Feature: gene Location: 2769309-2769812 bp Feature: domain Description: ArdA Location: 2769327-2769798 bp Feature: domain Description: ArdA Location: 2769327-2769798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: CP027499.1 Enterococcus faecium strain AUSMDU00004167 plasmid unnamed2, complete sequence (63221 bp)
Overview 1 RT 1: 24824-30677 bp Neighborhood of RT #1 [24824, 30796] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 24824-26518 bp Feature: domain Description: VirB4 Location: 25142-25826 bp Feature: domain Description: VirB4 Location: 2 5142 -2 582 6 bp Feature: gene Location: 26786-27019 bp Feature: gene Location: 27206-29083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27521-28259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 752 1-2 82 59 bp Feature: domain Description: HNHc Note: nucleases Location: 28817-28970 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8817-2 8970 bp Feature: gene Location: 29271-29591 bp Feature: gene Location: 29591-30796 bp Feature: domain Description: Glucosaminidase Location: 29867-30263 bp Feature: domain Description: Glucosaminidase Location: 2 9867-302 63 bp Feature: domain Description: Peptidase_M23 Location: 30440-30677 bp Feature: domain Description: Peptidase_M2 3 Location: 30440-30677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)