myRT

myRT report for GCA_003030105.1_ASM303010v1

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Seq: CP028169.1 Salmonella enterica strain CFSAN064034 chromosome, complete genome (4941290 bp)
Overview 1 RT 1: 1892101-1897297 bp Neighborhood of RT #1 [1892101, 1897297] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 1892101-1893060 bp Ori: AVS11400.1 Feature: domain Description: PRK10216 Location: 1892104-1893055 bp Feature: domain Description: PRK1 021 6 Location: 1 8921 04-1 893055 bp Feature: gene Location: 1893029-1894216 bp Ori: AVS11401.1 Feature: domain Description: PRK10473 Location: 1893032-1894208 bp Feature: domain Description: PRK1 0473 Location: 1 893032-1 894208 bp Feature: gene Location: 1895110-1895979 bp Ori: AVS14351.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1895155-1895740 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8951 55-1 895740 bp Feature: gene Location: 1896045-1897007 bp Feature: gene Location: 1897070-1897297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons

Seq: CP028170.1 Salmonella enterica strain CFSAN064034 plasmid pGMI17-002_1, complete sequence (177712 bp)
Overview 1 RT 1: 156730-162582 bp Neighborhood of RT #1 [156730, 162656] PRK06850 RVT-GII GIIM HD_2 Feature: gene Location: 156730-157116 bp Feature: gene Location: 157204-159657 bp Ori: AVS14649.1 Feature: domain Description: PRK06850 Location: 157393-158563 bp Feature: domain Description: PRK06850 Location: 157393-158563 bp Feature: gene Location: 160142-161530 bp Ori: AVS14650.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160472-161090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160472 -161090 bp Feature: domain Description: GIIM Note: maturase Location: 161144-161357 bp Feature: domain Description: GIIM Note: maturase Location: 161144-161357 bp Feature: gene Location: 161776-161979 bp Feature: gene Location: 162051-162656 bp Ori: AVS14652.1 Feature: domain Description: HD_2 Location: 162075-162582 bp Feature: domain Description: HD_2 Location: 162 075-162 582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06850 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), HD_2 (pfam12917)