myRT

myRT report for GCA_003030365.1_ASM303036v1

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Seq: CP027703.1 Escherichia coli strain 675SK2 plasmid p675SK2_B, complete sequence (173882 bp)
Overview 1 RT 1: 139333-152171 bp Neighborhood of RT #1 [139333, 152296] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc RsmA RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 139333-139566 bp Ori: AVR75725.1 Feature: domain Description: DUF905 Location: 139363-139561 bp Feature: domain Description: DUF905 Location: 1 39363-1 39561 bp Feature: gene Location: 139634-140131 bp Ori: AVR75726.1 Feature: domain Description: PRK13732 Location: 139637-140129 bp Feature: domain Description: PRK1 3732 Location: 1 39637-1 401 29 bp Feature: gene Location: 140280-142181 bp Ori: AVR75727.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140547-141378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40547-1 41 378 bp Feature: domain Description: Intron_maturas2 Location: 141492-141750 bp Feature: domain Description: Intron_maturas2 Location: 1 41 492-1 41 750 bp Feature: domain Description: HNHc Note: nucleases Location: 141924-142086 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 924-1 42086 bp Feature: gene Location: 142795-142872 bp Feature: gene Location: 142898-143134 bp Feature: gene Location: 144036-145703 bp Ori: AVR75728.1 Gene: ltrA Feature: domain Description: RVT_N Location: 144084-144321 bp Feature: domain Description: RVT_N Location: 1 44084-1 44321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144372-145014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44372-1 4501 4 bp Feature: domain Description: GIIM Note: maturase Location: 145065-145299 bp Feature: domain Description: GIIM Note: maturase Location: 1 45065-1 45299 bp Feature: domain Description: HNHc Note: nucleases Location: 145509-145668 bp Feature: domain Description: HNHc Note: nucleases Location: 1 45509-1 45668 bp Feature: gene Location: 145681-146075 bp Feature: gene Location: 146056-146621 bp Feature: domain Description: RsmA Location: 146143-146347 bp Feature: domain Description: RsmA Location: 1 461 43-1 46347 bp Feature: gene Location: 148081-148311 bp Feature: gene Location: 148569-148826 bp Feature: gene Location: 149706-151373 bp Ori: AVR75731.1 Gene: ltrA Feature: domain Description: RVT_N Location: 149754-149991 bp Feature: domain Description: RVT_N Location: 1 49754-1 49991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150042-150684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50042-1 50684 bp Feature: domain Description: GIIM Note: maturase Location: 150735-150969 bp Feature: domain Description: GIIM Note: maturase Location: 1 50735-1 50969 bp Feature: domain Description: HNHc Note: nucleases Location: 151179-151338 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 1 79-1 51 338 bp Feature: gene Location: 151686-151877 bp Feature: gene Location: 151874-152296 bp Ori: AVR75733.1 Feature: domain Description: DUF1380 Location: 151877-152171 bp Feature: domain Description: DUF1 380 Location: 1 51 877-1 521 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), RsmA (COG0030), DUF1380 (pfam07128)

Seq: CP027701.1 Escherichia coli strain 675SK2 chromosome, complete genome (4889200 bp)
Overview 1 RT 1: 666862-674763 bp 2 RT 2: 1095463-1098871 bp 3 RT 3: 1788841-1793412 bp 4 RT 4: 2118713-2123750 bp 5 RT 5: 2992274-2997852 bp Neighborhood of RT #1 [666862, 674763] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [1095463, 1099271] SH3_2 SH3_2 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [1788841, 1793456] RVT-GII GIIM PHA02517 RacX Neighborhood of RT #4 [2118713, 2124147] PHA02517 RVT-GII InsE Neighborhood of RT #5 [2992274, 2998028] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 666862-667134 bp Ori: AVR71584.1 Feature: domain Description: PRK09678 Location: 666871-667027 bp Feature: domain Description: PRK09678 Location: 666871-66702 7 bp Feature: gene Location: 667780-668748 bp Feature: gene Location: 668750-669682 bp Ori: AVR71586.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 668852-669446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 668852 -669446 bp Feature: gene Location: 670137-671278 bp Feature: domain Description: Arm-DNA-bind_3 Location: 670146-670398 bp Feature: domain Description: Arm-DNA-bind_3 Location: 670146-670398 bp Feature: gene Location: 671281-671754 bp Feature: domain Description: PHA02517 Location: 671287-671752 bp Feature: domain Description: PHA02 517 Location: 6712 87-671752 bp Feature: gene Location: 671844-673367 bp Ori: AVR71587.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672117-672849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672 117-672 849 bp Feature: domain Description: GIIM Note: maturase Location: 672924-673122 bp Feature: domain Description: GIIM Note: maturase Location: 672 92 4-67312 2 bp Feature: gene Location: 673661-674032 bp Feature: gene Location: 674025-674763 bp Feature: gene Location: 1095463-1095745 bp Feature: domain Description: SH3_2 Location: 1095478-1095541 bp Feature: domain Description: SH3_2 Location: 1095478-1095541 bp Feature: domain Description: SH3_2 Location: 1095571-1095688 bp Feature: domain Description: SH3_2 Location: 1095571-1095688 bp Feature: gene Location: 1095788-1096261 bp Feature: domain Description: PHA02517 Location: 1095794-1096259 bp Feature: domain Description: PHA02 517 Location: 1095794-10962 59 bp Feature: gene Location: 1096351-1097874 bp Ori: AVR71952.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1096624-1097356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109662 4-1097356 bp Feature: domain Description: GIIM Note: maturase Location: 1097431-1097629 bp Feature: domain Description: GIIM Note: maturase Location: 1097431-109762 9 bp Feature: gene Location: 1098168-1098539 bp Feature: gene Location: 1098532-1099271 bp Feature: domain Description: InsE Location: 1098535-1098871 bp Feature: domain Description: InsE Location: 1098535-1098871 bp Feature: gene Location: 1788841-1789579 bp Feature: gene Location: 1789572-1789943 bp Feature: gene Location: 1790237-1791760 bp Ori: AVR72576.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790510-1791242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790510-17912 42 bp Feature: domain Description: GIIM Note: maturase Location: 1791317-1791515 bp Feature: domain Description: GIIM Note: maturase Location: 1791317-1791515 bp Feature: gene Location: 1791850-1792323 bp Feature: domain Description: PHA02517 Location: 1791856-1792321 bp Feature: domain Description: PHA02 517 Location: 1791856-1792 32 1 bp Feature: gene Location: 1792737-1793456 bp Ori: AVR72577.1 Feature: domain Description: RacX Location: 1792749-1793412 bp Feature: domain Description: RacX Location: 1792 749-1793412 bp Feature: gene Location: 2118713-2120623 bp Feature: gene Location: 2120665-2121138 bp Feature: domain Description: PHA02517 Location: 2120671-2121136 bp Feature: domain Description: PHA02 517 Location: 2 12 0671-2 12 1136 bp Feature: gene Location: 2121228-2122750 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2121501-2121684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 1501-2 12 1684 bp Feature: gene Location: 2123044-2123415 bp Feature: gene Location: 2123408-2124147 bp Feature: domain Description: InsE Location: 2123411-2123750 bp Feature: domain Description: InsE Location: 2 12 3411-2 12 3750 bp Feature: gene Location: 2992274-2992504 bp Feature: gene Location: 2993387-2995663 bp Ori: AVR73670.1 Feature: domain Description: AAA_15 Location: 2993420-2994428 bp Feature: domain Description: AAA_15 Location: 2 99342 0-2 99442 8 bp Feature: gene Location: 2995778-2996878 bp Ori: AVR73671.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2995961-2996489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 995961-2 996489 bp Feature: gene Location: 2997359-2997514 bp Feature: gene Location: 2997534-2998028 bp Ori: AVR75517.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2997678-2997852 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2 997678-2 997852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), SH3_2 (pfam07653), InsE (COG2963), RacX (COG1794), AAA_15 (pfam13175)
Nuc_deoxyrib_tr (pfam05014)