myRT

myRT report for GCA_003030925.1_ASM303092v1

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Seq: CP028355.1 Shewanella baltica strain CW2 chromosome, complete genome (4944783 bp)
Overview 1 RT 1: 1450897-1456773 bp 2 RT 2: 4223016-4228036 bp Neighborhood of RT #1 [1450897, 1456775] PRK11797 Tim44 RVT-Retrons PucG Neighborhood of RT #2 [4223016, 4228038] PinE RVT-GII GIIM EmrE PRK15417 Feature: gene Location: 1450897-1451316 bp Ori: AVT47340.1 Feature: domain Description: PRK11797 Location: 1450900-1451314 bp Feature: domain Description: PRK1 1 797 Location: 1 450900-1 451 31 4 bp Feature: gene Location: 1451729-1452592 bp Ori: AVT47341.1 Feature: domain Description: Tim44 Location: 1451834-1452590 bp Feature: domain Description: Tim44 Location: 1 451 834-1 452590 bp Feature: gene Location: 1453335-1455092 bp Ori: AVT47342.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1453470-1454091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 453470-1 454091 bp Feature: gene Location: 1455380-1455640 bp Feature: gene Location: 1455642-1456775 bp Ori: AVT47344.1 Feature: domain Description: PucG Location: 1455678-1456773 bp Feature: domain Description: PucG Location: 1 455678-1 456773 bp Feature: gene Location: 4223016-4223552 bp Feature: gene Location: 4223614-4224237 bp Ori: AVT50230.1 Feature: domain Description: PinE Location: 4223623-4224178 bp Feature: domain Description: PinE Location: 4223623-42241 78 bp Feature: gene Location: 4225000-4226349 bp Ori: AVT49496.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4225282-4225900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4225282-4225900 bp Feature: domain Description: GIIM Note: maturase Location: 4225948-4226152 bp Feature: domain Description: GIIM Note: maturase Location: 4225948-42261 52 bp Feature: gene Location: 4226448-4226780 bp Ori: AVT49497.1 Feature: domain Description: EmrE Location: 4226457-4226763 bp Feature: domain Description: EmrE Location: 4226457-4226763 bp Feature: gene Location: 4227025-4228038 bp Ori: AVT49498.1 Feature: domain Description: PRK15417 Location: 4227028-4228036 bp Feature: domain Description: PRK1 541 7 Location: 4227028-4228036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11797 (D-ribose pyranase; Provisional), Tim44 (smart00978), RVT-Retrons, PucG (COG0075), PinE (COG1961), RVT-GII, GIIM (pfam08388), EmrE (pfam13536), PRK15417 (integron integrase)