myRT

myRT report for GCA_003031345.1_ASM303134v1

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Seq: CP024917.1 Klebsiella pneumoniae strain NH54 plasmid pKPNH54.1, complete sequence (126018 bp)
Overview 1 RT 1: 27960-32042 bp Neighborhood of RT #1 [27960, 32179] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 27960-28391 bp Ori: AVT97341.1 Feature: domain Description: PRK10276 Location: 28011-28374 bp Feature: domain Description: PRK1 0276 Location: 2801 1 -28374 bp Feature: gene Location: 28550-28801 bp Feature: gene Location: 28801-30285 bp Ori: AVT97343.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29203-29893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29203-29893 bp Feature: gene Location: 30534-31505 bp Ori: AVT97344.1 Feature: domain Description: StbA Location: 30537-31482 bp Feature: domain Description: StbA Location: 30537-31 482 bp Feature: gene Location: 31508-32179 bp Ori: AVT97345.1 Feature: domain Description: Plasmid_stab_B Location: 31523-31730 bp Feature: domain Description: Plasmid_stab_B Location: 31 523-31 730 bp Feature: domain Description: Plasmid_stab_B Location: 31835-32042 bp Feature: domain Description: Plasmid_stab_B Location: 31 835-32042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP024916.1 Klebsiella pneumoniae strain NH54 chromosome, complete genome (5399501 bp)
Overview 1 RT 1: 1364138-1367884 bp 2 RT 2: 2128420-2132527 bp 3 RT 3: 3410614-3414490 bp 4 RT 4: 3547306-3552186 bp 5 RT 5: 4690170-4696617 bp Neighborhood of RT #1 [1364138, 1368081] OafA RVT-GII PRK10276 Neighborhood of RT #2 [2128420, 2132529] DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [3410614, 3414490] PRK10276 RVT-GII Neighborhood of RT #4 [3547306, 3552191] YccC PRK10016 RVT-GII dacD Neighborhood of RT #5 [4690170, 4697474] RVT-Retrons HTH_XRE DinI RVT-GII Phage_GPA Feature: gene Location: 1364138-1365259 bp Ori: AVT93406.1 Feature: domain Description: OafA Location: 1364234-1365230 bp Feature: domain Description: OafA Location: 13642 34-13652 30 bp Feature: gene Location: 1365712-1365963 bp Feature: gene Location: 1365963-1367447 bp Ori: AVT93408.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366365-1367055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366365-1367055 bp Feature: gene Location: 1367525-1367764 bp Feature: gene Location: 1367764-1368081 bp Ori: AVT93410.1 Feature: domain Description: PRK10276 Location: 1367770-1367884 bp Feature: domain Description: PRK102 76 Location: 1367770-1367884 bp Feature: gene Location: 2128420-2128662 bp Ori: AVT94071.1 Feature: domain Description: DinI Location: 2128471-2128651 bp Feature: domain Description: DinI Location: 2 12 8471-2 12 8651 bp Feature: gene Location: 2129028-2129279 bp Feature: gene Location: 2129279-2130763 bp Ori: AVT94073.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2129681-2130371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 9681-2 130371 bp Feature: gene Location: 2130842-2131261 bp Ori: AVT94074.1 Feature: domain Description: PRK10276 Location: 2130845-2131256 bp Feature: domain Description: PRK102 76 Location: 2 130845-2 1312 56 bp Feature: gene Location: 2131264-2132529 bp Ori: AVT94075.1 Feature: domain Description: umuC Location: 2131267-2132527 bp Feature: domain Description: umuC Location: 2 1312 67-2 132 52 7 bp Feature: gene Location: 3410614-3410985 bp Ori: AVT95278.1 Feature: domain Description: PRK10276 Location: 3410659-3410821 bp Feature: domain Description: PRK102 76 Location: 3410659-341082 1 bp Feature: gene Location: 3410942-3411181 bp Feature: gene Location: 3411258-3412742 bp Ori: AVT95280.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3411660-3412350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3411660-3412 350 bp Feature: gene Location: 3412742-3412993 bp Feature: gene Location: 3413654-3414490 bp Feature: gene Location: 3547306-3548364 bp Ori: AVT95405.1 Feature: domain Description: YccC Location: 3547312-3548350 bp Feature: domain Description: YccC Location: 3547312 -3548350 bp Feature: gene Location: 3548463-3548936 bp Ori: AVT95406.1 Feature: domain Description: PRK10016 Location: 3548466-3548925 bp Feature: domain Description: PRK10016 Location: 3548466-354892 5 bp Feature: gene Location: 3549018-3550502 bp Ori: AVT95407.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3549420-3550110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354942 0-3550110 bp Feature: gene Location: 3550502-3550753 bp Feature: gene Location: 3551022-3552191 bp Ori: AVT95409.1 Feature: domain Description: dacD Location: 3551031-3552186 bp Feature: domain Description: dacD Location: 3551031-3552 186 bp Feature: gene Location: 4690170-4690364 bp Feature: gene Location: 4690363-4690794 bp Feature: gene Location: 4690933-4691883 bp Ori: AVT96418.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4691113-4691656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4691113-4691656 bp Feature: gene Location: 4691861-4692169 bp Ori: AVT96419.1 Feature: domain Description: HTH_XRE Location: 4691873-4692038 bp Feature: domain Description: HTH_XRE Location: 4691873-4692 038 bp Feature: gene Location: 4692790-4693230 bp Ori: AVT96420.1 Feature: domain Description: DinI Location: 4693045-4693228 bp Feature: domain Description: DinI Location: 4693045-46932 2 8 bp Feature: gene Location: 4693308-4694792 bp Ori: AVT96421.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693710-4694400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693710-4694400 bp Feature: gene Location: 4694792-4695043 bp Feature: gene Location: 4695258-4697474 bp Ori: AVT96423.1 Feature: domain Description: Phage_GPA Location: 4695675-4696617 bp Feature: domain Description: Phage_GPA Location: 4695675-4696617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), RVT-Retrons, HTH_XRE (smart00530)
Phage_GPA (pfam05840)