myRT

myRT report for GCA_003031775.1_ASM303177v1

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Seq: CP020515.1 Escherichia coli strain 219 plasmid unnamed, complete sequence (158757 bp)
Overview 1 RT 1: 111738-115047 bp Neighborhood of RT #1 [111738, 115459] DDE_Tnp_Tn3 RVT-GII GIIM InsE Feature: gene Location: 111738-111971 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 111753-111909 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 1 1 753-1 1 1 909 bp Feature: gene Location: 111993-112467 bp Feature: gene Location: 112557-114080 bp Ori: AVU58430.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112830-113562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2830-1 1 3562 bp Feature: domain Description: GIIM Note: maturase Location: 113637-113835 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3637-1 1 3835 bp Feature: gene Location: 114374-114745 bp Feature: gene Location: 114738-115459 bp Feature: domain Description: InsE Location: 114813-115047 bp Feature: domain Description: InsE Location: 1 1 481 3-1 1 5047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP020514.1 Escherichia coli strain 219 chromosome, complete genome (5003410 bp)
Overview 1 RT 1: 562270-566030 bp 2 RT 2: 858354-862645 bp 3 RT 3: 2867749-2873184 bp 4 RT 4: 4285704-4290905 bp Neighborhood of RT #1 [562270, 566032] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [858354, 862645] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2867749, 2873184] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4285704, 4291012] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 562270-563009 bp Feature: domain Description: InsE Location: 562273-562612 bp Feature: domain Description: InsE Location: 562 2 73-562 612 bp Feature: gene Location: 563002-563373 bp Feature: gene Location: 563667-565190 bp Ori: AVU54128.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563940-564672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563940-564672 bp Feature: domain Description: GIIM Note: maturase Location: 564747-564945 bp Feature: domain Description: GIIM Note: maturase Location: 564747-564945 bp Feature: gene Location: 565280-565753 bp Feature: domain Description: PHA02517 Location: 565286-565751 bp Feature: domain Description: PHA02 517 Location: 5652 86-565751 bp Feature: gene Location: 565796-566032 bp Feature: domain Description: DUF1016_N Location: 565853-566030 bp Feature: domain Description: DUF1016_N Location: 565853-566030 bp Feature: gene Location: 858354-859583 bp Ori: AVU54403.1 Feature: domain Description: YesM Location: 858834-859575 bp Feature: domain Description: YesM Location: 858834-859575 bp Feature: gene Location: 859656-859844 bp Feature: gene Location: 860166-860687 bp Ori: AVU54405.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860172-860454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860172 -860454 bp Feature: domain Description: GIIM Note: maturase Location: 860502-860682 bp Feature: domain Description: GIIM Note: maturase Location: 860502 -860682 bp Feature: gene Location: 860715-861254 bp Ori: AVU54406.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 861045-861123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 861045-86112 3 bp Feature: gene Location: 861479-861766 bp Feature: gene Location: 861740-862645 bp Feature: gene Location: 2867749-2868488 bp Feature: domain Description: InsE Location: 2867752-2868091 bp Feature: domain Description: InsE Location: 2 867752 -2 868091 bp Feature: gene Location: 2868481-2868852 bp Feature: gene Location: 2869146-2870669 bp Ori: AVU56193.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2869419-2870151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 869419-2 870151 bp Feature: domain Description: GIIM Note: maturase Location: 2870226-2870424 bp Feature: domain Description: GIIM Note: maturase Location: 2 8702 2 6-2 87042 4 bp Feature: gene Location: 2870759-2871232 bp Feature: domain Description: PHA02517 Location: 2870765-2871230 bp Feature: domain Description: PHA02 517 Location: 2 870765-2 8712 30 bp Feature: gene Location: 2871274-2873184 bp Feature: gene Location: 4285704-4286593 bp Feature: gene Location: 4286596-4287737 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4286605-4286857 bp Feature: domain Description: Arm-DNA-bind_3 Location: 42 86605-42 86857 bp Feature: gene Location: 4288192-4289124 bp Ori: AVU57463.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4288294-4288888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 882 94-42 88888 bp Feature: gene Location: 4289126-4290094 bp Feature: gene Location: 4290740-4291012 bp Ori: AVU57465.1 Feature: domain Description: PRK09678 Location: 4290749-4290905 bp Feature: domain Description: PRK09678 Location: 42 90749-42 90905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)