myRT

myRT report for GCA_003031795.1_ASM303179v1

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Seq: CP020516.1 Escherichia coli strain 222 chromosome, complete genome (5162123 bp)
Overview 1 RT 1: 850247-853964 bp 2 RT 2: 3270768-3275354 bp 3 RT 3: 3977679-3984059 bp 4 RT 4: 4435440-4438835 bp 5 RT 5: 4442271-4445627 bp 6 RT 6: 4605866-4609449 bp 7 RT 7: 4634943-4640283 bp Neighborhood of RT #1 [850247, 854185] InsE PHA02517 RVT-GII GIIM PHA02517 NotI Neighborhood of RT #2 [3270768, 3275354] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #3 [3977679, 3984059] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Neighborhood of RT #4 [4435440, 4438834] COG2085 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4442271, 4446056] DUF2254 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4605866, 4609448] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #7 [4634943, 4640306] RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 850247-850963 bp Feature: domain Description: InsE Location: 850250-850586 bp Feature: domain Description: InsE Location: 850250-850586 bp Feature: domain Description: PHA02517 Location: 850844-850964 bp Feature: domain Description: PHA0251 7 Location: 850844-850964 bp Feature: gene Location: 850956-851327 bp Feature: gene Location: 851621-853144 bp Ori: AVU59274.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851894-852626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851 894-852626 bp Feature: domain Description: GIIM Note: maturase Location: 852701-852899 bp Feature: domain Description: GIIM Note: maturase Location: 852701 -852899 bp Feature: gene Location: 853234-853707 bp Feature: domain Description: PHA02517 Location: 853240-853705 bp Feature: domain Description: PHA0251 7 Location: 853240-853705 bp Feature: gene Location: 853751-854185 bp Feature: domain Description: NotI Location: 853778-853964 bp Feature: domain Description: NotI Location: 853778-853964 bp Feature: gene Location: 3270768-3271802 bp Ori: AVU61561.1 Feature: domain Description: Q Location: 3270771-3271794 bp Feature: domain Description: Q Location: 3270771 -3271 794 bp Feature: gene Location: 3272315-3273679 bp Ori: AVU61562.1 Feature: domain Description: FRG Location: 3272882-3273167 bp Feature: domain Description: FRG Location: 3272882-32731 67 bp Feature: gene Location: 3273788-3274738 bp Ori: AVU61563.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3273968-3274511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3273968-327451 1 bp Feature: gene Location: 3274704-3275024 bp Ori: AVU61564.1 Feature: domain Description: HTH_XRE Location: 3274719-3274878 bp Feature: domain Description: HTH_XRE Location: 327471 9-3274878 bp Feature: gene Location: 3275061-3275354 bp Feature: gene Location: 3977679-3978599 bp Ori: AVU62176.1 Feature: domain Description: AbiEii Location: 3977721-3978462 bp Feature: domain Description: AbiEii Location: 3977721 -3978462 bp Feature: gene Location: 3978586-3979389 bp Ori: AVU62177.1 Feature: domain Description: AbiEi_3_N Location: 3978619-3978880 bp Feature: domain Description: AbiEi_3_N Location: 397861 9-3978880 bp Feature: domain Description: AbiEi_3 Location: 3978892-3979348 bp Feature: domain Description: AbiEi_3 Location: 3978892-3979348 bp Feature: gene Location: 3979684-3982893 bp Ori: AVU62178.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3980212-3980701 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 398021 2-3980701 bp Feature: domain Description: nitrilase Location: 3982207-3982804 bp Feature: domain Description: nitrilase Location: 3982207-3982804 bp Feature: gene Location: 3983240-3983710 bp Feature: gene Location: 3983901-3984059 bp Feature: gene Location: 4435440-4435853 bp Ori: AVU62582.1 Feature: domain Description: COG2085 Location: 4435539-4435686 bp Feature: domain Description: COG2085 Location: 4435539-4435686 bp Feature: gene Location: 4435780-4436267 bp Feature: domain Description: PHA02517 Location: 4435783-4435954 bp Feature: domain Description: PHA0251 7 Location: 4435783-4435954 bp Feature: gene Location: 4436348-4437871 bp Ori: AVU62583.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4436621-4437353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4436621 -4437353 bp Feature: domain Description: GIIM Note: maturase Location: 4437428-4437626 bp Feature: domain Description: GIIM Note: maturase Location: 4437428-4437626 bp Feature: gene Location: 4438165-4438596 bp Feature: gene Location: 4438529-4438834 bp Feature: domain Description: PHA02517 Location: 4438532-4438835 bp Feature: domain Description: PHA0251 7 Location: 4438532-4438835 bp Feature: gene Location: 4442271-4442684 bp Ori: AVU62588.1 Feature: domain Description: DUF2254 Location: 4442313-4442610 bp Feature: domain Description: DUF2254 Location: 444231 3-444261 0 bp Feature: gene Location: 4442619-4443107 bp Feature: domain Description: PHA02517 Location: 4442622-4443096 bp Feature: domain Description: PHA0251 7 Location: 4442622-4443096 bp Feature: gene Location: 4443188-4444711 bp Ori: AVU62589.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443461-4444193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443461 -44441 93 bp Feature: domain Description: GIIM Note: maturase Location: 4444268-4444466 bp Feature: domain Description: GIIM Note: maturase Location: 4444268-4444466 bp Feature: gene Location: 4445005-4445436 bp Feature: gene Location: 4445369-4446056 bp Feature: domain Description: InsE Location: 4445378-4445627 bp Feature: domain Description: InsE Location: 4445378-4445627 bp Feature: gene Location: 4605866-4606185 bp Feature: domain Description: InsE Location: 4605875-4606160 bp Feature: domain Description: InsE Location: 4605875-46061 60 bp Feature: gene Location: 4606321-4606794 bp Feature: domain Description: PHA02517 Location: 4606327-4606792 bp Feature: domain Description: PHA0251 7 Location: 4606327-4606792 bp Feature: gene Location: 4606884-4608407 bp Ori: AVU62741.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4607157-4607889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46071 57-4607889 bp Feature: domain Description: GIIM Note: maturase Location: 4607964-4608162 bp Feature: domain Description: GIIM Note: maturase Location: 4607964-46081 62 bp Feature: gene Location: 4608701-4609072 bp Feature: gene Location: 4609065-4609448 bp Feature: domain Description: PHA02517 Location: 4609095-4609449 bp Feature: domain Description: PHA0251 7 Location: 4609095-4609449 bp Feature: gene Location: 4634943-4635848 bp Feature: gene Location: 4635822-4636109 bp Feature: gene Location: 4636334-4636873 bp Ori: AVU62768.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636664-4636742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636664-4636742 bp Feature: gene Location: 4636901-4637422 bp Ori: AVU62769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636907-4637189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636907-46371 89 bp Feature: domain Description: GIIM Note: maturase Location: 4637237-4637417 bp Feature: domain Description: GIIM Note: maturase Location: 4637237-463741 7 bp Feature: gene Location: 4638005-4639234 bp Ori: AVU63421.1 Feature: domain Description: YesM Location: 4638485-4639226 bp Feature: domain Description: YesM Location: 4638485-4639226 bp Feature: gene Location: 4639251-4640306 bp Ori: AVU62770.1 Feature: domain Description: YesN Location: 4639254-4639653 bp Feature: domain Description: YesN Location: 4639254-4639653 bp Feature: domain Description: YesN Location: 4639986-4640283 bp Feature: domain Description: YesN Location: 4639986-4640283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), NotI (pfam12183), Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), AbiEii (pfam08843)
AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), COG2085 (Predicted dinucleotide-binding enzyme ), DUF2254 (pfam10011), YesM (COG2972), YesN (COG4753)

Seq: CP020519.1 Escherichia coli strain 222 plasmid unnamed1, complete sequence (120667 bp)
Overview 1 RT 1: 100401-103797 bp 2 RT 2: 108664-120667 bp Neighborhood of RT #1 [100401, 103799] RVT_N RVT-GII GIIM HNHc PRK09738 Neighborhood of RT #2 [108664, 120702] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 100401-100607 bp Feature: gene Location: 100609-100797 bp Feature: gene Location: 101579-103246 bp Ori: AVU63716.1 Gene: ltrA Feature: domain Description: RVT_N Location: 101627-101864 bp Feature: domain Description: RVT_N Location: 10162 7-101864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101915-102557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101915-102 557 bp Feature: domain Description: GIIM Note: maturase Location: 102608-102842 bp Feature: domain Description: GIIM Note: maturase Location: 102 608-102 842 bp Feature: domain Description: HNHc Note: nucleases Location: 103052-103211 bp Feature: domain Description: HNHc Note: nucleases Location: 103052 -1032 11 bp Feature: gene Location: 103224-103406 bp Feature: gene Location: 103641-103799 bp Ori: AVU63718.1 Feature: domain Description: PRK09738 Location: 103644-103797 bp Feature: domain Description: PRK09738 Location: 103644-103797 bp Feature: gene Location: 108664-108897 bp Ori: AVU63723.1 Feature: domain Description: DUF905 Location: 108694-108892 bp Feature: domain Description: DUF905 Location: 108694-108892 bp Feature: gene Location: 108960-109457 bp Ori: AVU63724.1 Feature: domain Description: PRK13732 Location: 108963-109455 bp Feature: domain Description: PRK13732 Location: 108963-109455 bp Feature: gene Location: 109607-111508 bp Ori: AVU63725.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109874-110705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109874-110705 bp Feature: domain Description: Intron_maturas2 Location: 110819-111077 bp Feature: domain Description: Intron_maturas2 Location: 110819-111077 bp Feature: domain Description: HNHc Note: nucleases Location: 111251-111413 bp Feature: domain Description: HNHc Note: nucleases Location: 1112 51-111413 bp Feature: gene Location: 112186-112392 bp Feature: gene Location: 112394-112582 bp Feature: gene Location: 113364-115031 bp Ori: AVU63727.1 Gene: ltrA Feature: domain Description: RVT_N Location: 113412-113649 bp Feature: domain Description: RVT_N Location: 113412 -113649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113700-114342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113700-114342 bp Feature: domain Description: GIIM Note: maturase Location: 114393-114627 bp Feature: domain Description: GIIM Note: maturase Location: 114393-11462 7 bp Feature: domain Description: HNHc Note: nucleases Location: 114837-114996 bp Feature: domain Description: HNHc Note: nucleases Location: 114837-114996 bp Feature: gene Location: 115009-115403 bp Feature: gene Location: 115384-115947 bp Ori: AVU63728.1 Feature: domain Description: AdoMet_MTases Location: 115546-115846 bp Feature: domain Description: AdoMet_MTases Location: 115546-115846 bp Feature: gene Location: 117860-117979 bp Feature: gene Location: 118141-118298 bp Feature: gene Location: 119035-120702 bp Ori: AVU63731.1 Gene: ltrA Feature: domain Description: RVT_N Location: 119083-119320 bp Feature: domain Description: RVT_N Location: 119083-11932 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119371-120013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119371-12 0013 bp Feature: domain Description: GIIM Note: maturase Location: 120064-120298 bp Feature: domain Description: GIIM Note: maturase Location: 12 0064-12 02 98 bp Feature: domain Description: HNHc Note: nucleases Location: 120508-120667 bp Feature: domain Description: HNHc Note: nucleases Location: 12 0508-12 0667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), AdoMet_MTases (cl17173)

Seq: CP020517.1 Escherichia coli strain 222 plasmid unnamed3, complete sequence (109864 bp)
Overview 1 RT 1: 735-4380 bp 2 RT 2: 103794-107574 bp Neighborhood of RT #1 [735, 4502] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [103794, 107574] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 735-854 bp Feature: gene Location: 999-1174 bp Feature: gene Location: 1911-3578 bp Ori: AVU63445.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1959-2196 bp Feature: domain Description: RVT_N Location: 1959-2196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247-2889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247-2889 bp Feature: domain Description: GIIM Note: maturase Location: 2940-3174 bp Feature: domain Description: GIIM Note: maturase Location: 2940-3 174 bp Feature: domain Description: HNHc Note: nucleases Location: 3384-3543 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 84-3 543 bp Feature: gene Location: 3892-4083 bp Feature: gene Location: 4080-4502 bp Ori: AVU63447.1 Feature: domain Description: DUF1380 Location: 4083-4380 bp Feature: domain Description: DUF13 80 Location: 4083 -43 80 bp Feature: gene Location: 103794-104027 bp Ori: AVU63547.1 Feature: domain Description: DUF905 Location: 103824-104022 bp Feature: domain Description: DUF905 Location: 103 824-104022 bp Feature: gene Location: 104085-104570 bp Ori: AVU63548.1 Feature: domain Description: PRK13732 Location: 104088-104568 bp Feature: domain Description: PRK13 73 2 Location: 104088-104568 bp Feature: gene Location: 104720-106621 bp Ori: AVU63549.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104987-105818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104987-105818 bp Feature: domain Description: Intron_maturas2 Location: 105932-106190 bp Feature: domain Description: Intron_maturas2 Location: 10593 2-106190 bp Feature: domain Description: HNHc Note: nucleases Location: 106364-106526 bp Feature: domain Description: HNHc Note: nucleases Location: 1063 64-106526 bp Feature: gene Location: 107184-107396 bp Feature: gene Location: 107338-107574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348)