myRT

myRT report for GCA_003037005.2_ASM303700v2

Download annotations/find similar RTs

Seq: CP036307.1 Klebsiella pneumoniae strain WCHKP020098 plasmid p1_020098, complete sequence (229483 bp)
Overview 1 RT 1: 213778-216906 bp Neighborhood of RT #1 [213778, 216920] DUF1472 RVT-GII PRK10276 Feature: gene Location: 213778-213870 bp Feature: domain Description: DUF1472 Location: 213790-213856 bp Feature: domain Description: DUF1 472 Location: 21 3790-21 3856 bp Feature: gene Location: 214094-214324 bp Feature: gene Location: 214558-216090 bp Ori: QBH35800.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214960-215698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4960-21 5698 bp Feature: gene Location: 216090-216341 bp Feature: gene Location: 216495-216920 bp Ori: QBH35802.1 Gene: umuD Feature: domain Description: PRK10276 Location: 216498-216906 bp Feature: domain Description: PRK1 0276 Location: 21 6498-21 6906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1472 (pfam07339), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP036308.1 Klebsiella pneumoniae strain WCHKP020098 plasmid p2_020098, complete sequence (11970 bp)
Overview 1 RT 1: 8545-12701 bp Neighborhood of RT #1 [8545, 12712] RVT-GII Cloacin E2R135 Cytotoxic Feature: gene Location: 8545-8790 bp Feature: gene Location: 9187-9438 bp Feature: gene Location: 9438-10922 bp Ori: QBH35848.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9840-10530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9840-10530 bp Feature: gene Location: 11027-12712 bp Ori: QBH35833.1 Feature: domain Description: Cloacin Location: 11162-11984 bp Feature: domain Description: Cloacin Location: 11162 -11984 bp Feature: domain Description: E2R135 Location: 11993-12398 bp Feature: domain Description: E2 R135 Location: 11993-12 398 bp Feature: domain Description: Cytotoxic Location: 12452-12701 bp Feature: domain Description: Cytotoxic Location: 12 452 -12 701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000)

Seq: CP036305.1 Klebsiella pneumoniae strain WCHKP020098 chromosome, complete genome (5444559 bp)
Overview 1 RT 1: 1237432-1242317 bp 2 RT 2: 1401474-1404250 bp 3 RT 3: 1853444-1858316 bp 4 RT 4: 1874057-1880319 bp 5 RT 5: 3125373-3129511 bp 6 RT 6: 3277765-3281864 bp 7 RT 7: 3350597-3354859 bp 8 RT 8: 3677265-3682103 bp Neighborhood of RT #1 [1237432, 1242322] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1401474, 1404250] RVT-GII Neighborhood of RT #3 [1853444, 1858330] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1874057, 1880319] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3125373, 3129511] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3277765, 3281875] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3350597, 3354897] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3677265, 3682153] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1237432-1239816 bp Ori: QBH31356.1 Feature: domain Description: Phage_GPA Location: 1237996-1238962 bp Feature: domain Description: Phage_GPA Location: 123 7996-123 8962 bp Feature: gene Location: 1240046-1240297 bp Feature: gene Location: 1240297-1241781 bp Ori: QBH31358.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1240699-1241389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1240699-12413 89 bp Feature: gene Location: 1241889-1242077 bp Feature: gene Location: 1242089-1242322 bp Ori: QBH31360.1 Feature: domain Description: DinI Location: 1242134-1242317 bp Feature: domain Description: DinI Location: 124213 4-12423 17 bp Feature: gene Location: 1401474-1401677 bp Feature: gene Location: 1401670-1402008 bp Feature: gene Location: 1402105-1403589 bp Ori: QBH31518.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402507-1403197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402507-1403 197 bp Feature: gene Location: 1403589-1403840 bp Feature: gene Location: 1403993-1404250 bp Feature: gene Location: 1853444-1854613 bp Ori: QBH31902.1 Gene: dacD Feature: domain Description: dacD Location: 1853453-1854608 bp Feature: domain Description: dacD Location: 1853 453 -1854608 bp Feature: gene Location: 1854883-1855134 bp Feature: gene Location: 1855134-1856618 bp Ori: QBH31904.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1855536-1856226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185553 6-1856226 bp Feature: gene Location: 1856700-1857173 bp Ori: QBH31905.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1856703-1857162 bp Feature: domain Description: PRK10016 Location: 1856703 -1857162 bp Feature: gene Location: 1857272-1858330 bp Ori: QBH31906.1 Feature: domain Description: YccC Location: 1857278-1858316 bp Feature: domain Description: YccC Location: 1857278-18583 16 bp Feature: gene Location: 1874057-1875160 bp Ori: QBH31925.1 Feature: domain Description: STKc_PknB_like Location: 1874189-1874630 bp Feature: domain Description: STKc_PknB_like Location: 1874189-187463 0 bp Feature: gene Location: 1875230-1875472 bp Feature: gene Location: 1875719-1876819 bp Ori: QBH31926.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1875902-1876430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1875902-187643 0 bp Feature: gene Location: 1876934-1879180 bp Ori: QBH31927.1 Feature: domain Description: AAA_15 Location: 1876937-1877945 bp Feature: domain Description: AAA_15 Location: 187693 7-1877945 bp Feature: gene Location: 1880089-1880319 bp Feature: gene Location: 3125373-3126638 bp Ori: QBH33077.1 Gene: umuC Feature: domain Description: umuC Location: 3125376-3126636 bp Feature: domain Description: umuC Location: 3 1253 76-3 12663 6 bp Feature: gene Location: 3126640-3127059 bp Ori: QBH33078.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3126643-3127054 bp Feature: domain Description: PRK10276 Location: 3 126643 -3 127054 bp Feature: gene Location: 3127139-3128623 bp Ori: QBH33079.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3127541-3128231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 127541-3 12823 1 bp Feature: gene Location: 3128623-3128874 bp Feature: gene Location: 3129422-3129511 bp Feature: gene Location: 3277765-3279030 bp Ori: QBH33229.1 Gene: umuC Feature: domain Description: umuC Location: 3277768-3279028 bp Feature: domain Description: umuC Location: 3 277768-3 279028 bp Feature: gene Location: 3279033-3279452 bp Ori: QBH33230.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3279036-3279447 bp Feature: domain Description: PRK10276 Location: 3 27903 6-3 279447 bp Feature: gene Location: 3279531-3281015 bp Ori: QBH33231.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279933-3280623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 27993 3 -3 280623 bp Feature: gene Location: 3281015-3281266 bp Feature: gene Location: 3281633-3281875 bp Ori: QBH33233.1 Feature: domain Description: DinI Location: 3281684-3281864 bp Feature: domain Description: DinI Location: 3 281684-3 281864 bp Feature: gene Location: 3350597-3350887 bp Feature: gene Location: 3350899-3351132 bp Ori: QBH33304.1 Feature: domain Description: PRK10597 Location: 3350902-3351127 bp Feature: domain Description: PRK10597 Location: 3 3 50902-3 3 51127 bp Feature: gene Location: 3351211-3352695 bp Ori: QBH33305.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3351613-3352303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 51613 -3 3 523 03 bp Feature: gene Location: 3352695-3352946 bp Feature: gene Location: 3353536-3354897 bp Ori: QBH33307.1 Feature: domain Description: PRK05318 Location: 3353560-3354859 bp Feature: domain Description: PRK053 18 Location: 3 3 53 560-3 3 54859 bp Feature: gene Location: 3677265-3678143 bp Ori: QBH35340.1 Feature: domain Description: Phage_CI_repr Location: 3677292-3677475 bp Feature: domain Description: Phage_CI_repr Location: 3 677292-3 677475 bp Feature: domain Description: Phage_CI_repr Location: 3677604-3677796 bp Feature: domain Description: Phage_CI_repr Location: 3 677604-3 677796 bp Feature: domain Description: Phage_CI_C Location: 3677823-3678117 bp Feature: domain Description: Phage_CI_C Location: 3 677823 -3 678117 bp Feature: gene Location: 3678155-3679099 bp Feature: gene Location: 3679198-3680682 bp Ori: QBH33602.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3679600-3680290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 679600-3 680290 bp Feature: gene Location: 3680682-3680933 bp Feature: gene Location: 3681101-3682153 bp Ori: QBH33604.1 Feature: domain Description: int Location: 3681104-3682103 bp Feature: domain Description: int Location: 3 681104-3 682103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP036306.1 Klebsiella pneumoniae strain WCHKP020098 plasmid pKPC2_020098, complete sequence (149519 bp)
Overview 1 RT 1: 60397-64493 bp Neighborhood of RT #1 [60397, 64618] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 60397-60627 bp Feature: gene Location: 60890-61147 bp Feature: gene Location: 62027-63694 bp Ori: QBH35484.1 Gene: ltrA Feature: domain Description: RVT_N Location: 62075-62312 bp Feature: domain Description: RVT_N Location: 62075-62312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62363-63005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62363-63005 bp Feature: domain Description: GIIM Note: maturase Location: 63056-63290 bp Feature: domain Description: GIIM Note: maturase Location: 63056-63290 bp Feature: domain Description: HNHc Note: nucleases Location: 63500-63659 bp Feature: domain Description: HNHc Note: nucleases Location: 63500-63659 bp Feature: gene Location: 64008-64199 bp Feature: gene Location: 64196-64618 bp Ori: QBH35486.1 Feature: domain Description: DUF1380 Location: 64199-64493 bp Feature: domain Description: DUF1380 Location: 64 199-64 4 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)