myRT

myRT report for GCA_003037325.2_ASM303732v2

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Seq: CP028797.1 Klebsiella pneumoniae strain WCHKP040035 chromosome, complete genome (5360164 bp)
Overview 1 RT 1: 1254971-1259856 bp 2 RT 2: 1384133-1387859 bp 3 RT 3: 1463892-1468045 bp 4 RT 4: 1790489-1795939 bp 5 RT 5: 1940529-1944665 bp 6 RT 6: 3192241-3197973 bp 7 RT 7: 3214230-3219111 bp 8 RT 8: 3665224-3669214 bp Neighborhood of RT #1 [1254971, 1259861] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1384133, 1388026] Beta_helix RVT-GII PRK10276 Neighborhood of RT #3 [1463892, 1468071] RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #4 [1790489, 1795941] PRK05318 RVT-GII PRK10276 umuC Neighborhood of RT #5 [1940529, 1944667] RVT-GII PRK10276 umuC Neighborhood of RT #6 [3192241, 3198503] AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #7 [3214230, 3219116] YccC PRK10016 RVT-GII dacD Neighborhood of RT #8 [3665224, 3669264] Terminase_2 PRK10276 RVT-GII int Feature: gene Location: 1254971-1257355 bp Ori: AWA56414.1 Feature: domain Description: Phage_GPA Location: 1255535-1256501 bp Feature: domain Description: Phage_GPA Location: 1 255535-1 256501 bp Feature: gene Location: 1257585-1257836 bp Feature: gene Location: 1257836-1259320 bp Ori: AWA56416.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258238-1258928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 258238-1 258928 bp Feature: gene Location: 1259428-1259616 bp Feature: gene Location: 1259628-1259861 bp Ori: AWA56418.1 Feature: domain Description: DinI Location: 1259673-1259856 bp Feature: domain Description: DinI Location: 1 259673-1 259856 bp Feature: gene Location: 1384133-1385443 bp Ori: AWA56554.1 Feature: domain Description: Beta_helix Location: 1384580-1385096 bp Feature: domain Description: Beta_helix Location: 1 384580-1 385096 bp Feature: gene Location: 1385647-1385898 bp Feature: gene Location: 1385898-1387382 bp Ori: AWA56556.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386300-1386990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 386300-1 386990 bp Feature: gene Location: 1387459-1387698 bp Feature: gene Location: 1387655-1388026 bp Ori: AWA56557.1 Feature: domain Description: PRK10276 Location: 1387700-1387859 bp Feature: domain Description: PRK1 0276 Location: 1 387700-1 387859 bp Feature: gene Location: 1463892-1464230 bp Feature: gene Location: 1464403-1464654 bp Feature: gene Location: 1464654-1466138 bp Ori: AWA56631.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1465056-1465746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 465056-1 465746 bp Feature: gene Location: 1466237-1467181 bp Feature: gene Location: 1467193-1468071 bp Ori: AWA56633.1 Feature: domain Description: Phage_CI_repr Location: 1467220-1467403 bp Feature: domain Description: Phage_CI_repr Location: 1 467220-1 467403 bp Feature: domain Description: Phage_CI_repr Location: 1467532-1467724 bp Feature: domain Description: Phage_CI_repr Location: 1 467532-1 467724 bp Feature: domain Description: Phage_CI_C Location: 1467751-1468045 bp Feature: domain Description: Phage_CI_C Location: 1 467751 -1 468045 bp Feature: gene Location: 1790489-1791850 bp Ori: AWA56929.1 Feature: domain Description: PRK05318 Location: 1790513-1791812 bp Feature: domain Description: PRK0531 8 Location: 1 79051 3-1 791 81 2 bp Feature: gene Location: 1792440-1792691 bp Feature: gene Location: 1792691-1794175 bp Ori: AWA56931.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793093-1793783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 793093-1 793783 bp Feature: gene Location: 1794254-1794673 bp Ori: AWA56932.1 Feature: domain Description: PRK10276 Location: 1794257-1794668 bp Feature: domain Description: PRK1 0276 Location: 1 794257-1 794668 bp Feature: gene Location: 1794676-1795941 bp Ori: AWA56933.1 Feature: domain Description: umuC Location: 1794679-1795939 bp Feature: domain Description: umuC Location: 1 794679-1 795939 bp Feature: gene Location: 1940529-1940618 bp Feature: gene Location: 1941166-1941417 bp Feature: gene Location: 1941417-1942901 bp Ori: AWA57079.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1941819-1942509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 941 81 9-1 942509 bp Feature: gene Location: 1942981-1943400 bp Ori: AWA57080.1 Feature: domain Description: PRK10276 Location: 1942984-1943395 bp Feature: domain Description: PRK1 0276 Location: 1 942984-1 943395 bp Feature: gene Location: 1943402-1944667 bp Ori: AWA57081.1 Feature: domain Description: umuC Location: 1943405-1944665 bp Feature: domain Description: umuC Location: 1 943405-1 944665 bp Feature: gene Location: 3192241-3192471 bp Feature: gene Location: 3193350-3195626 bp Ori: AWA58260.1 Feature: domain Description: AAA_15 Location: 3193383-3194391 bp Feature: domain Description: AAA_1 5 Location: 31 93383-31 94391 bp Feature: gene Location: 3195741-3196841 bp Ori: AWA58261.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3195924-3196452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 95924-31 96452 bp Feature: gene Location: 3197088-3197330 bp Feature: gene Location: 3197400-3198503 bp Ori: AWA58262.1 Feature: domain Description: STKc_PknB_like Location: 3197532-3197973 bp Feature: domain Description: STKc_PknB_like Location: 31 97532-31 97973 bp Feature: gene Location: 3214230-3215288 bp Ori: AWA58280.1 Feature: domain Description: YccC Location: 3214236-3215274 bp Feature: domain Description: YccC Location: 321 4236-321 5274 bp Feature: gene Location: 3215387-3215860 bp Ori: AWA58281.1 Feature: domain Description: PRK10016 Location: 3215390-3215849 bp Feature: domain Description: PRK1 001 6 Location: 321 5390-321 5849 bp Feature: gene Location: 3215942-3217426 bp Ori: AWA58282.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3216344-3217034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 6344-321 7034 bp Feature: gene Location: 3217426-3217677 bp Feature: gene Location: 3217947-3219116 bp Ori: AWA58284.1 Feature: domain Description: dacD Location: 3217956-3219111 bp Feature: domain Description: dacD Location: 321 7956-321 91 1 1 bp Feature: gene Location: 3665224-3665844 bp Ori: AWA58661.1 Feature: domain Description: Terminase_2 Location: 3665269-3665767 bp Feature: domain Description: Terminase_2 Location: 3665269-3665767 bp Feature: gene Location: 3665902-3666231 bp Ori: AWA58662.1 Feature: domain Description: PRK10276 Location: 3665908-3666061 bp Feature: domain Description: PRK1 0276 Location: 3665908-3666061 bp Feature: gene Location: 3666309-3667793 bp Ori: AWA58663.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3666711-3667401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366671 1 -3667401 bp Feature: gene Location: 3667793-3668044 bp Feature: gene Location: 3668212-3669264 bp Ori: AWA58665.1 Feature: domain Description: int Location: 3668215-3669214 bp Feature: domain Description: int Location: 366821 5-366921 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), Beta_helix (pfam13229), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), umuC (PRK03609), AAA_15 (pfam13175)
RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), Terminase_2 (pfam03592), int (PHA02601)

Seq: CP028796.1 Klebsiella pneumoniae strain WCHKP040035 plasmid pKPC2_040035, complete sequence (112467 bp)
Overview 1 RT 1: 23672-27893 bp 2 RT 2: 83249-87331 bp Neighborhood of RT #1 [23672, 27893] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [83249, 87468] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: AWA55082.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 2 3675-2 3969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: AWA55084.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 2 4644-2 4881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4932 -2 5574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 2 562 5-2 5859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6069-2 62 2 8 bp Feature: gene Location: 27143-27400 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 83249-83680 bp Ori: AWA55145.1 Feature: domain Description: PRK10276 Location: 83300-83663 bp Feature: domain Description: PRK102 76 Location: 83300-83663 bp Feature: gene Location: 83839-84090 bp Feature: gene Location: 84090-85574 bp Ori: AWA55147.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84492-85182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84492 -85182 bp Feature: gene Location: 85823-86794 bp Ori: AWA55148.1 Feature: domain Description: StbA Location: 85826-86771 bp Feature: domain Description: StbA Location: 8582 6-86771 bp Feature: gene Location: 86797-87468 bp Ori: AWA55149.1 Feature: domain Description: Plasmid_stab_B Location: 86812-87019 bp Feature: domain Description: Plasmid_stab_B Location: 86812 -87019 bp Feature: domain Description: Plasmid_stab_B Location: 87124-87331 bp Feature: domain Description: Plasmid_stab_B Location: 8712 4-87331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)