myRT

myRT report for GCA_003038215.2_ASM303821v2

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Seq: CP028792.1 Klebsiella pneumoniae strain WCHKP020030 plasmid pQnrS1_020030, complete sequence (125009 bp)
Overview 1 RT 1: 109162-112432 bp Neighborhood of RT #1 [109162, 112446] RVT-GII PRK10276 Feature: gene Location: 109162-109377 bp Feature: gene Location: 109644-109874 bp Feature: gene Location: 110108-111616 bp Ori: AWA71929.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110510-111224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 051 0-1 1 1 224 bp Feature: gene Location: 111616-111867 bp Feature: gene Location: 112021-112446 bp Ori: AWA71931.1 Feature: domain Description: PRK10276 Location: 112024-112432 bp Feature: domain Description: PRK1 0276 Location: 1 1 2024-1 1 2432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP028793.1 Klebsiella pneumoniae strain WCHKP020030 chromosome, complete genome (5376106 bp)
Overview 1 RT 1: 1264287-1269411 bp 2 RT 2: 1428980-1432201 bp 3 RT 3: 1876253-1881125 bp 4 RT 4: 1896866-1903128 bp 5 RT 5: 3270333-3274432 bp 6 RT 6: 3603853-3609757 bp 7 RT 7: 3694057-3698612 bp Neighborhood of RT #1 [1264287, 1269944] Phage_GPA RVT-GII DDE_Tnp_1_5 Neighborhood of RT #2 [1428980, 1432275] RVT-GII PRK10276 Terminase_2 Neighborhood of RT #3 [1876253, 1881139] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1896866, 1903128] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3270333, 3274443] umuC PRK10276 RVT-GII DinI Neighborhood of RT #6 [3603853, 3609807] AIPR IS5 RVT-GII int Neighborhood of RT #7 [3694057, 3698612] UvrB RVT-GII Feature: gene Location: 1264287-1266671 bp Ori: AWA73181.1 Feature: domain Description: Phage_GPA Location: 1264851-1265817 bp Feature: domain Description: Phage_GPA Location: 12 64851-12 65817 bp Feature: gene Location: 1266901-1267152 bp Feature: gene Location: 1267152-1268636 bp Ori: AWA73183.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1267554-1268244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 67554-12 682 44 bp Feature: gene Location: 1268744-1268932 bp Feature: gene Location: 1269021-1269944 bp Ori: AWA73185.1 Feature: domain Description: DDE_Tnp_1_5 Location: 1269078-1269411 bp Feature: domain Description: DDE_Tnp_1_5 Location: 12 69078-12 69411 bp Feature: gene Location: 1428980-1429318 bp Feature: gene Location: 1429490-1429741 bp Feature: gene Location: 1429741-1431225 bp Ori: AWA73344.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430143-1430833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430143-1430833 bp Feature: gene Location: 1431304-1431633 bp Ori: AWA73345.1 Feature: domain Description: PRK10276 Location: 1431310-1431463 bp Feature: domain Description: PRK102 76 Location: 1431310-1431463 bp Feature: gene Location: 1431691-1432275 bp Ori: AWA73346.1 Feature: domain Description: Terminase_2 Location: 1431736-1432201 bp Feature: domain Description: Terminase_2 Location: 1431736-1432 2 01 bp Feature: gene Location: 1876253-1877422 bp Ori: AWA73721.1 Feature: domain Description: dacD Location: 1876262-1877417 bp Feature: domain Description: dacD Location: 18762 62 -1877417 bp Feature: gene Location: 1877692-1877943 bp Feature: gene Location: 1877943-1879427 bp Ori: AWA73723.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878345-1879035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878345-1879035 bp Feature: gene Location: 1879509-1879982 bp Ori: AWA73724.1 Feature: domain Description: PRK10016 Location: 1879512-1879971 bp Feature: domain Description: PRK10016 Location: 1879512 -1879971 bp Feature: gene Location: 1880081-1881139 bp Ori: AWA73725.1 Feature: domain Description: YccC Location: 1880087-1881125 bp Feature: domain Description: YccC Location: 1880087-188112 5 bp Feature: gene Location: 1896866-1897969 bp Ori: AWA73745.1 Feature: domain Description: STKc_PknB_like Location: 1896998-1897439 bp Feature: domain Description: STKc_PknB_like Location: 1896998-1897439 bp Feature: gene Location: 1898039-1898281 bp Feature: gene Location: 1898528-1899628 bp Ori: AWA73746.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1898711-1899239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1898711-18992 39 bp Feature: gene Location: 1899743-1902019 bp Ori: AWA73747.1 Feature: domain Description: AAA_15 Location: 1899776-1900784 bp Feature: domain Description: AAA_15 Location: 1899776-1900784 bp Feature: gene Location: 1902898-1903128 bp Feature: gene Location: 3270333-3271598 bp Ori: AWA75034.1 Feature: domain Description: umuC Location: 3270336-3271596 bp Feature: domain Description: umuC Location: 32 70336-32 71596 bp Feature: gene Location: 3271601-3272020 bp Ori: AWA75035.1 Feature: domain Description: PRK10276 Location: 3271604-3272015 bp Feature: domain Description: PRK102 76 Location: 32 71604-32 72 015 bp Feature: gene Location: 3272099-3273583 bp Ori: AWA75036.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3272501-3273191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 72 501-32 73191 bp Feature: gene Location: 3273583-3273834 bp Feature: gene Location: 3274201-3274443 bp Ori: AWA75038.1 Feature: domain Description: DinI Location: 3274252-3274432 bp Feature: domain Description: DinI Location: 32 742 52 -32 74432 bp Feature: gene Location: 3603853-3605595 bp Ori: AWA75345.1 Feature: domain Description: AIPR Location: 3604552-3605218 bp Feature: domain Description: AIPR Location: 3604552 -36052 18 bp Feature: gene Location: 3605943-3606923 bp Ori: AWA75346.1 Feature: domain Description: IS5 Location: 3606132-3606909 bp Feature: domain Description: IS5 Location: 3606132 -3606909 bp Feature: gene Location: 3607023-3608336 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607425-3608115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360742 5-3608115 bp Feature: gene Location: 3608336-3608587 bp Feature: gene Location: 3608755-3609807 bp Ori: AWA75348.1 Feature: domain Description: int Location: 3608758-3609757 bp Feature: domain Description: int Location: 3608758-3609757 bp Feature: gene Location: 3694057-3696078 bp Ori: AWA75430.1 Feature: domain Description: UvrB Location: 3694063-3696064 bp Feature: domain Description: UvrB Location: 3694063-3696064 bp Feature: gene Location: 3696289-3696540 bp Feature: gene Location: 3696540-3698024 bp Ori: AWA75432.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696942-3697632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696942 -3697632 bp Feature: gene Location: 3698221-3698400 bp Feature: gene Location: 3698400-3698612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DDE_Tnp_1_5 (pfam13737), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Terminase_2 (pfam03592), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), umuC (PRK03609), DinI (pfam06183), AIPR (pfam10592), IS5 (COG3039), int (PHA02601), UvrB (pfam12344)

Seq: CP028791.1 Klebsiella pneumoniae strain WCHKP020030 plasmid pOXA1_020030, complete sequence (288222 bp)
Overview 1 RT 1: 29348-33520 bp 2 RT 2: 187299-190873 bp Neighborhood of RT #1 [29348, 33534] cas7_csf2 RVT-GII PRK10276 Neighborhood of RT #2 [187299, 190873] RVT-GII INT_Cre_C Feature: gene Location: 29348-30139 bp Ori: AWA71559.1 Feature: domain Description: cas7_csf2 Location: 29669-30083 bp Feature: domain Description: cas7_csf2 Location: 29669-3 0083 bp Feature: gene Location: 31291-31542 bp Feature: gene Location: 31542-33026 bp Ori: AWA71561.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31944-32634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1944-3 263 4 bp Feature: gene Location: 32942-33121 bp Feature: gene Location: 33112-33534 bp Ori: AWA71563.1 Feature: domain Description: PRK10276 Location: 33118-33520 bp Feature: domain Description: PRK10276 Location: 3 3 118-3 3 520 bp Feature: gene Location: 187299-187484 bp Feature: gene Location: 187533-187784 bp Feature: gene Location: 187784-189268 bp Ori: AWA71712.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188186-188876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188186-188876 bp Feature: gene Location: 189354-190490 bp Ori: AWA71713.1 Feature: domain Description: INT_Cre_C Location: 189777-190431 bp Feature: domain Description: INT_Cre_C Location: 189777-19043 1 bp Feature: gene Location: 190556-190873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas7_csf2 (TIGR03115), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), INT_Cre_C (cd00799)

Seq: CP028790.1 Klebsiella pneumoniae strain WCHKP020030 plasmid pKPC2_020030, complete sequence (104810 bp)
Overview 1 RT 1: 25767-29988 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 25767-26189 bp Ori: AWA71419.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: AWA71421.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 28164 -28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)