myRT

myRT report for GCA_003047145.2_ASM304714v2

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Seq: CP025149.2 Pseudomonas stutzeri strain SGAir0442 chromosome, complete genome (4524655 bp)
Overview 1 RT 1: 294690-303284 bp 2 RT 2: 1092468-1096910 bp 3 RT 3: 1254870-1261300 bp 4 RT 4: 2064447-2068001 bp 5 RT 5: 2461334-2467581 bp 6 RT 6: 2660222-2668187 bp 7 RT 7: 3343814-3350126 bp 8 RT 8: 3608901-3614291 bp 9 RT 9: 4177110-4183923 bp Neighborhood of RT #1 [294690, 303295] P Q RVT-GII GIIM Methyltransf_32 KOG2651 FcbT3 Neighborhood of RT #2 [1092468, 1096927] PRK13339 RVT-GII GIIM Lipoprotein_16 Neighborhood of RT #3 [1254870, 1261305] metG PRK11670 RVT-GII GIIM CspC dcd Neighborhood of RT #4 [2064447, 2068001] Alanine_zipper RVT-GII GIIM PRK10190 Neighborhood of RT #5 [2461334, 2467601] ARO8 MarR RVT-GII GIIM rpsA cmk Neighborhood of RT #6 [2660222, 2668213] WzzB hip RVT-GII GIIM PRK11634 dCache_1 Tar Neighborhood of RT #7 [3343814, 3350149] EmrA outer_NodT RVT-GII GIIM TIGR02284 FhlA EAL Neighborhood of RT #8 [3608901, 3614341] PRK14151 PRK10869 RVT-GII GIIM fur BamE Neighborhood of RT #9 [4177110, 4184033] PRK02999 RVT-GII GIIM COG2905 DEDDh Feature: gene Location: 294690-296456 bp Ori: AVX11509.1 Feature: domain Description: P Location: 294723-296451 bp Feature: domain Description: P Location: 294723-296451 bp Feature: gene Location: 296456-297454 bp Ori: AVX11510.1 Feature: domain Description: Q Location: 296492-297449 bp Feature: domain Description: Q Location: 296492-297449 bp Feature: gene Location: 297932-299353 bp Ori: AVX11511.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298289-298904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298289-298904 bp Feature: domain Description: GIIM Note: maturase Location: 298958-299186 bp Feature: domain Description: GIIM Note: maturase Location: 298958-2991 86 bp Feature: gene Location: 300596-301828 bp Ori: AVX11513.1 Feature: domain Description: Methyltransf_32 Location: 300965-301283 bp Feature: domain Description: Methyltransf_32 Location: 300965-301 283 bp Feature: domain Description: KOG2651 Location: 301616-301793 bp Feature: domain Description: KOG2651 Location: 301 61 6-301 793 bp Feature: gene Location: 301919-303295 bp Ori: AVX11514.1 Feature: domain Description: FcbT3 Location: 301931-303284 bp Feature: domain Description: FcbT3 Location: 301 931 -303284 bp Feature: gene Location: 1092468-1093979 bp Ori: AVX12229.1 Gene: mqo Feature: domain Description: PRK13339 Location: 1092504-1093974 bp Feature: domain Description: PRK1 3339 Location: 1 092504-1 093974 bp Feature: gene Location: 1093939-1094259 bp Feature: gene Location: 1094464-1095885 bp Ori: AVX12231.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094821-1095436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 094821 -1 095436 bp Feature: domain Description: GIIM Note: maturase Location: 1095490-1095718 bp Feature: domain Description: GIIM Note: maturase Location: 1 095490-1 09571 8 bp Feature: gene Location: 1095977-1096168 bp Feature: gene Location: 1096343-1096927 bp Ori: AVX12233.1 Feature: domain Description: Lipoprotein_16 Location: 1096436-1096910 bp Feature: domain Description: Lipoprotein_1 6 Location: 1 096436-1 09691 0 bp Feature: gene Location: 1254870-1256909 bp Ori: AVX12387.1 Feature: domain Description: metG Location: 1254885-1256904 bp Feature: domain Description: metG Location: 1 254885-1 256904 bp Feature: gene Location: 1257080-1258174 bp Ori: AVX12388.1 Gene: apbC Feature: domain Description: PRK11670 Location: 1257092-1258145 bp Feature: domain Description: PRK1 1 670 Location: 1 257092-1 2581 45 bp Feature: gene Location: 1258303-1259724 bp Ori: AVX12389.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258660-1259275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 258660-1 259275 bp Feature: domain Description: GIIM Note: maturase Location: 1259329-1259557 bp Feature: domain Description: GIIM Note: maturase Location: 1 259329-1 259557 bp Feature: gene Location: 1260202-1260411 bp Ori: AVX12390.1 Feature: domain Description: CspC Location: 1260217-1260406 bp Feature: domain Description: CspC Location: 1 26021 7-1 260406 bp Feature: gene Location: 1260739-1261305 bp Ori: AVX12391.1 Feature: domain Description: dcd Location: 1260748-1261300 bp Feature: domain Description: dcd Location: 1 260748-1 261 300 bp Feature: gene Location: 2064447-2064701 bp Ori: AVX15255.1 Feature: domain Description: Alanine_zipper Location: 2064540-2064699 bp Feature: domain Description: Alanine_zipper Location: 2064540-2064699 bp Feature: gene Location: 2064743-2064973 bp Feature: gene Location: 2065178-2066599 bp Ori: AVX13072.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065535-2066150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065535-20661 50 bp Feature: domain Description: GIIM Note: maturase Location: 2066204-2066432 bp Feature: domain Description: GIIM Note: maturase Location: 2066204-2066432 bp Feature: gene Location: 2066686-2067651 bp Ori: AVX13073.1 Feature: domain Description: PRK10190 Location: 2066716-2067613 bp Feature: domain Description: PRK1 01 90 Location: 206671 6-206761 3 bp Feature: gene Location: 2067720-2068001 bp Feature: gene Location: 2461334-2462500 bp Ori: AVX15269.1 Feature: domain Description: ARO8 Location: 2461382-2462480 bp Feature: domain Description: ARO8 Location: 2461 382-2462480 bp Feature: gene Location: 2462581-2463024 bp Ori: AVX13397.1 Feature: domain Description: MarR Location: 2462647-2462974 bp Feature: domain Description: MarR Location: 2462647-2462974 bp Feature: gene Location: 2463140-2464561 bp Ori: AVX13398.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463497-2464112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463497-24641 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 2464166-2464394 bp Feature: domain Description: GIIM Note: maturase Location: 24641 66-2464394 bp Feature: gene Location: 2465039-2466721 bp Ori: AVX13399.1 Feature: domain Description: rpsA Location: 2465042-2466713 bp Feature: domain Description: rpsA Location: 2465042-246671 3 bp Feature: gene Location: 2466912-2467601 bp Ori: AVX13400.1 Feature: domain Description: cmk Location: 2466930-2467581 bp Feature: domain Description: cmk Location: 2466930-2467581 bp Feature: gene Location: 2660222-2661493 bp Ori: AVX15276.1 Feature: domain Description: WzzB Location: 2660240-2661476 bp Feature: domain Description: WzzB Location: 2660240-2661 476 bp Feature: gene Location: 2661601-2661882 bp Ori: AVX13568.1 Gene: ihfB Feature: domain Description: hip Location: 2661604-2661877 bp Feature: domain Description: hip Location: 2661 604-2661 877 bp Feature: gene Location: 2662158-2663579 bp Ori: AVX13569.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662515-2663130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266251 5-26631 30 bp Feature: domain Description: GIIM Note: maturase Location: 2663184-2663412 bp Feature: domain Description: GIIM Note: maturase Location: 26631 84-266341 2 bp Feature: gene Location: 2664058-2665719 bp Ori: AVX13570.1 Feature: domain Description: PRK11634 Location: 2664079-2665696 bp Feature: domain Description: PRK1 1 634 Location: 2664079-2665696 bp Feature: gene Location: 2666051-2668213 bp Ori: AVX13571.1 Feature: domain Description: dCache_1 Location: 2666204-2666696 bp Feature: domain Description: dCache_1 Location: 2666204-2666696 bp Feature: domain Description: Tar Location: 2667167-2668187 bp Feature: domain Description: Tar Location: 26671 67-26681 87 bp Feature: gene Location: 3343814-3344929 bp Ori: AVX14209.1 Feature: domain Description: EmrA Location: 3343904-3344924 bp Feature: domain Description: EmrA Location: 3343904-3344924 bp Feature: gene Location: 3344926-3346323 bp Ori: AVX14210.1 Feature: domain Description: outer_NodT Location: 3344959-3346282 bp Feature: domain Description: outer_NodT Location: 3344959-3346282 bp Feature: gene Location: 3346402-3347823 bp Ori: AVX14211.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346759-3347374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346759-3347374 bp Feature: domain Description: GIIM Note: maturase Location: 3347428-3347656 bp Feature: domain Description: GIIM Note: maturase Location: 3347428-3347656 bp Feature: gene Location: 3348307-3348759 bp Ori: AVX14212.1 Feature: domain Description: TIGR02284 Location: 3348325-3348736 bp Feature: domain Description: TIGR02284 Location: 3348325-3348736 bp Feature: gene Location: 3348896-3350149 bp Ori: AVX14213.1 Feature: domain Description: FhlA Location: 3348989-3349427 bp Feature: domain Description: FhlA Location: 3348989-3349427 bp Feature: domain Description: EAL Location: 3349451-3350126 bp Feature: domain Description: EAL Location: 3349451 -33501 26 bp Feature: gene Location: 3608901-3609470 bp Ori: AVX14416.1 Gene: grpE Feature: domain Description: PRK14151 Location: 3608904-3609432 bp Feature: domain Description: PRK1 41 51 Location: 3608904-3609432 bp Feature: gene Location: 3609672-3611345 bp Ori: AVX14417.1 Gene: recN Feature: domain Description: PRK10869 Location: 3609675-3611328 bp Feature: domain Description: PRK1 0869 Location: 3609675-361 1 328 bp Feature: gene Location: 3611432-3612853 bp Ori: AVX14418.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3611789-3612404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 1 789-361 2404 bp Feature: domain Description: GIIM Note: maturase Location: 3612458-3612686 bp Feature: domain Description: GIIM Note: maturase Location: 361 2458-361 2686 bp Feature: gene Location: 3613329-3613733 bp Ori: AVX14419.1 Feature: domain Description: fur Location: 3613338-3613722 bp Feature: domain Description: fur Location: 361 3338-361 3722 bp Feature: gene Location: 3613829-3614341 bp Ori: AVX14420.1 Gene: bamE Feature: domain Description: BamE Location: 3613832-3614291 bp Feature: domain Description: BamE Location: 361 3832-361 4291 bp Feature: gene Location: 4177110-4179290 bp Ori: AVX14884.1 Feature: domain Description: PRK02999 Location: 4177113-4179282 bp Feature: domain Description: PRK02999 Location: 41 771 1 3-41 79282 bp Feature: gene Location: 4179333-4179563 bp Feature: gene Location: 4179768-4181189 bp Ori: AVX14886.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180125-4180740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 801 25-41 80740 bp Feature: domain Description: GIIM Note: maturase Location: 4180794-4181022 bp Feature: domain Description: GIIM Note: maturase Location: 41 80794-41 81 022 bp Feature: gene Location: 4181395-4183329 bp Ori: AVX14887.1 Feature: domain Description: COG2905 Location: 4181464-4183324 bp Feature: domain Description: COG2905 Location: 41 81 464-41 83324 bp Feature: gene Location: 4183326-4184033 bp Ori: AVX14888.1 Feature: domain Description: DEDDh Location: 4183449-4183923 bp Feature: domain Description: DEDDh Location: 41 83449-41 83923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-GII, GIIM (pfam08388), Methyltransf_32 (pfam13679), KOG2651 (KOG2651, rRNA adenine N-6-methyltransferase ), FcbT3 (COG4664), PRK13339 (malate:quinone oxidoreductase; Reviewed), Lipoprotein_16 (pfam03923), metG (TIGR00398)
PRK11670 (iron-sulfur cluster carrier protein ApbC), CspC (COG1278), dcd (PRK00416), Alanine_zipper (pfam11839), PRK10190 (L,D-transpeptidase; Provisional), ARO8 (COG1167), MarR (pfam01047), rpsA (TIGR00717), cmk (TIGR00017), WzzB (COG3765)
hip (TIGR00988), PRK11634 (ATP-dependent RNA helicase DeaD; Provisional), dCache_1 (pfam02743), Tar (COG0840), EmrA (COG1566), outer_NodT (TIGR01845), TIGR02284 (conserved hypothetical protein), FhlA (COG3604), EAL (smart00052), PRK14151 (heat shock protein GrpE; Provisional)
PRK10869 (recombination and repair protein; Provisional), fur (PRK09462), BamE (COG2913), PRK02999 (malate synthase G; Provisional), COG2905 (Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains ), DEDDh (cd06127)