myRT

myRT report for GCA_003047205.1_ASM304720v1

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Seq: CP028491.1 Carboxydocella thermautotrophica strain 019 chromosome, complete genome (2678168 bp)
Overview 1 RT 1: 317867-321670 bp 2 RT 2: 373908-378483 bp 3 RT 3: 422194-427416 bp 4 RT 4: 1043131-1050008 bp 5 RT 5: 1066160-1073173 bp 6 RT 6: 2230023-2234860 bp Neighborhood of RT #1 [317867, 321670] AtoC RVT-GII Neighborhood of RT #2 [373908, 378653] SLH SLH group_II_RT_mat RVT-GII group_II_RT_mat GIIM Neighborhood of RT #3 [422194, 427421] ParE_toxin PhdYeFM_antitox RVT-GII GIIM RMtype1_S_EcoKI_StySPI-TRD2-CR2_like HsdM Neighborhood of RT #4 [1043131, 1050475] PRK07661 VLCAD CaiA RVT-GII GIIM PaaI PotE Neighborhood of RT #5 [1066160, 1073181] formate-DH-alph FDH-N Big_7 Big_7 RVT-GII RVT-GII GIIM sda_beta sda_alpha Neighborhood of RT #6 [2230023, 2234901] AmiC RVT-GII GIIM RVT-GII DUF3786 MFS_SLC46_TetA_like Feature: gene Location: 317867-319213 bp Ori: AVX19519.1 Feature: domain Description: AtoC Location: 317873-319208 bp Feature: domain Description: AtoC Location: 31 7873-31 9208 bp Feature: gene Location: 319392-319631 bp Feature: gene Location: 319951-320364 bp Ori: AVX19521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320107-320314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201 07-32031 4 bp Feature: gene Location: 320437-320637 bp Feature: gene Location: 321143-321670 bp Feature: gene Location: 373908-376394 bp Ori: AVX19579.1 Feature: domain Description: SLH Location: 373995-374088 bp Feature: domain Description: SLH Location: 373995-374088 bp Feature: domain Description: SLH Location: 374151-374280 bp Feature: domain Description: SLH Location: 3741 51 -374280 bp Feature: gene Location: 376616-376909 bp Ori: AVX19580.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 376727-376883 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 376727-376883 bp Feature: gene Location: 376965-377165 bp Ori: AVX19581.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376971-377139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376971 -3771 39 bp Feature: gene Location: 377517-377819 bp Ori: AVX19582.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 377556-377760 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 377556-377760 bp Feature: gene Location: 378285-378653 bp Ori: AVX19583.1 Feature: domain Description: GIIM Note: maturase Location: 378294-378483 bp Feature: domain Description: GIIM Note: maturase Location: 378294-378483 bp Feature: gene Location: 422194-422511 bp Ori: AVX19618.1 Feature: domain Description: ParE_toxin Location: 422212-422482 bp Feature: domain Description: ParE_toxin Location: 42221 2-422482 bp Feature: gene Location: 422498-422767 bp Ori: AVX19619.1 Feature: domain Description: PhdYeFM_antitox Location: 422501-422711 bp Feature: domain Description: PhdYeFM_antitox Location: 422501 -42271 1 bp Feature: gene Location: 423766-425106 bp Ori: AVX19620.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424045-424663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424045-424663 bp Feature: domain Description: GIIM Note: maturase Location: 424714-424942 bp Feature: domain Description: GIIM Note: maturase Location: 42471 4-424942 bp Feature: gene Location: 425301-425885 bp Ori: AVX19621.1 Feature: domain Description: RMtype1_S_EcoKI_StySPI-TRD2-CR2_like Location: 425385-425856 bp Feature: domain Description: RMtype1 _S_EcoKI_StySPI-TRD2-CR2_like Location: 425385-425856 bp Feature: gene Location: 425895-427421 bp Ori: AVX19622.1 Feature: domain Description: HsdM Location: 425922-427416 bp Feature: domain Description: HsdM Location: 425922-42741 6 bp Feature: gene Location: 1043131-1044285 bp Ori: AVX20245.1 Feature: domain Description: PRK07661 Location: 1043134-1044280 bp Feature: domain Description: PRK07661 Location: 1 0431 34-1 044280 bp Feature: gene Location: 1044307-1046073 bp Ori: AVX20246.1 Feature: domain Description: VLCAD Location: 1044349-1045564 bp Feature: domain Description: VLCAD Location: 1 044349-1 045564 bp Feature: domain Description: CaiA Location: 1045720-1045933 bp Feature: domain Description: CaiA Location: 1 045720-1 045933 bp Feature: gene Location: 1046595-1047935 bp Ori: AVX20247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046874-1047492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 046874-1 047492 bp Feature: domain Description: GIIM Note: maturase Location: 1047543-1047771 bp Feature: domain Description: GIIM Note: maturase Location: 1 047543-1 047771 bp Feature: gene Location: 1048037-1048507 bp Ori: AVX20248.1 Feature: domain Description: PaaI Location: 1048085-1048484 bp Feature: domain Description: PaaI Location: 1 048085-1 048484 bp Feature: gene Location: 1048646-1050475 bp Ori: AVX20249.1 Feature: domain Description: PotE Location: 1048751-1050008 bp Feature: domain Description: PotE Location: 1 048751 -1 050008 bp Feature: gene Location: 1066160-1068520 bp Ori: AVX20269.1 Feature: domain Description: formate-DH-alph Location: 1066163-1068512 bp Feature: domain Description: formate-DH-alph Location: 1 0661 63-1 06851 2 bp Feature: gene Location: 1068523-1069800 bp Ori: AVX20270.1 Feature: domain Description: FDH-N Location: 1068541-1069141 bp Feature: domain Description: FDH-N Location: 1 068541 -1 0691 41 bp Feature: domain Description: Big_7 Location: 1069234-1069435 bp Feature: domain Description: Big_7 Location: 1 069234-1 069435 bp Feature: domain Description: Big_7 Location: 1069537-1069738 bp Feature: domain Description: Big_7 Location: 1 069537-1 069738 bp Feature: gene Location: 1070047-1070910 bp Ori: AVX20271.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070422-1070908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 070422-1 070908 bp Feature: gene Location: 1070932-1071483 bp Ori: AVX20272.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070941-1071040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 070941 -1 071 040 bp Feature: domain Description: GIIM Note: maturase Location: 1071091-1071319 bp Feature: domain Description: GIIM Note: maturase Location: 1 071 091 -1 071 31 9 bp Feature: gene Location: 1071617-1072276 bp Ori: AVX20273.1 Feature: domain Description: sda_beta Location: 1071626-1072217 bp Feature: domain Description: sda_beta Location: 1 071 626-1 07221 7 bp Feature: gene Location: 1072294-1073181 bp Ori: AVX20274.1 Feature: domain Description: sda_alpha Location: 1072306-1073173 bp Feature: domain Description: sda_alpha Location: 1 072306-1 0731 73 bp Feature: gene Location: 2230023-2230682 bp Ori: AVX21404.1 Feature: domain Description: AmiC Location: 2230101-2230671 bp Feature: domain Description: AmiC Location: 22301 01 -2230671 bp Feature: gene Location: 2230751-2231179 bp Feature: gene Location: 2231255-2231989 bp Ori: AVX21406.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2231264-2231546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2231 264-2231 546 bp Feature: domain Description: GIIM Note: maturase Location: 2231597-2231825 bp Feature: domain Description: GIIM Note: maturase Location: 2231 597-2231 825 bp Feature: gene Location: 2231989-2232594 bp Ori: AVX21407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2232268-2232571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2232268-2232571 bp Feature: gene Location: 2233085-2233702 bp Ori: AVX21408.1 Feature: domain Description: DUF3786 Location: 2233157-2233676 bp Feature: domain Description: DUF3786 Location: 22331 57-2233676 bp Feature: gene Location: 2233726-2234901 bp Ori: AVX21409.1 Feature: domain Description: MFS_SLC46_TetA_like Location: 2233762-2234860 bp Feature: domain Description: MFS_SLC46_TetA_like Location: 2233762-2234860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), RVT-GII, SLH (pfam00395), group_II_RT_mat (TIGR04416), GIIM (pfam08388), ParE_toxin (pfam05016), PhdYeFM_antitox (pfam02604), RMtype1_S_EcoKI_StySPI-TRD2-CR2_like (cd17517), HsdM (COG0286), PRK07661 (acetyl-CoA C-acetyltransferase)
VLCAD (cd01161), CaiA (COG1960), PaaI (COG2050), PotE (COG0531), formate-DH-alph (TIGR01553), FDH-N (cd10558), Big_7 (pfam17957), sda_beta, sda_alpha, AmiC (COG0860)
DUF3786 (pfam12654), MFS_SLC46_TetA_like (cd17330)