myRT

myRT report for GCA_003049785.1_ASM304978v1

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Seq: CP023467.1 Dickeya dadantii strain DSM 18020 chromosome, complete genome (4997541 bp)
Overview 1 RT 1: 47173-53265 bp 2 RT 2: 475609-479141 bp 3 RT 3: 611673-617520 bp 4 RT 4: 1178704-1184034 bp 5 RT 5: 1516851-1524283 bp 6 RT 6: 4618536-4624055 bp Neighborhood of RT #1 [47173, 53435] DUF4432 PRK15409 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #2 [475609, 479143] RVT-GII GIIM Cfa PRK13687 Neighborhood of RT #3 [611673, 617520] groES groEL RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [1178704, 1184036] PRK15433 RVT-GII GIIM proY PRK15000 Neighborhood of RT #5 [1516851, 1524696] PRK08292 VI_effect_Hcp1 RVT-GII GIIM VI_Rhs_Vgr PAAR_1 Lipase_3 Neighborhood of RT #6 [4618536, 4624063] PRK11638 PRK15119 RVT-GII GIIM rho Feature: gene Location: 47173-48381 bp Feature: domain Description: DUF4432 Location: 47362-48277 bp Feature: domain Description: DUF4432 Location: 47362-48277 bp Feature: gene Location: 48484-49446 bp Feature: domain Description: PRK15409 Location: 48487-49438 bp Feature: domain Description: PRK1 5409 Location: 48487-49438 bp Feature: gene Location: 50201-51139 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50303-50903 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50303-50903 bp Feature: gene Location: 51136-52791 bp Feature: domain Description: COG3950 Location: 51334-52684 bp Feature: domain Description: COG3950 Location: 51 334-52684 bp Feature: gene Location: 52788-53435 bp Feature: domain Description: TIGR02646 Location: 52866-53265 bp Feature: domain Description: TIGR02646 Location: 52866-53265 bp Feature: gene Location: 475609-475779 bp Feature: gene Location: 475913-476134 bp Feature: gene Location: 476480-477706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476801-477419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476801 -47741 9 bp Feature: domain Description: GIIM Note: maturase Location: 477467-477680 bp Feature: domain Description: GIIM Note: maturase Location: 477467-477680 bp Feature: gene Location: 478156-478875 bp Feature: domain Description: Cfa Location: 478216-478591 bp Feature: domain Description: Cfa Location: 47821 6-478591 bp Feature: gene Location: 478886-479143 bp Feature: domain Description: PRK13687 Location: 478889-479141 bp Feature: domain Description: PRK1 3687 Location: 478889-4791 41 bp Feature: gene Location: 611673-611966 bp Feature: domain Description: groES Location: 611676-611961 bp Feature: domain Description: groES Location: 61 1 676-61 1 961 bp Feature: gene Location: 612017-613663 bp Feature: domain Description: groEL Location: 612023-613649 bp Feature: domain Description: groEL Location: 61 2023-61 3649 bp Feature: gene Location: 614774-616477 bp Feature: domain Description: RVT_N Location: 614825-615068 bp Feature: domain Description: RVT_N Location: 61 4825-61 5068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615113-615758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 51 1 3-61 5758 bp Feature: domain Description: GIIM Note: maturase Location: 615812-616043 bp Feature: domain Description: GIIM Note: maturase Location: 61 581 2-61 6043 bp Feature: domain Description: HNHc Note: nucleases Location: 616256-616415 bp Feature: domain Description: HNHc Note: nucleases Location: 61 6256-61 641 5 bp Feature: gene Location: 616865-617131 bp Feature: gene Location: 617311-617520 bp Feature: gene Location: 1178704-1180023 bp Feature: domain Description: PRK15433 Location: 1178707-1180012 bp Feature: domain Description: PRK1 5433 Location: 1 1 78707-1 1 8001 2 bp Feature: gene Location: 1180045-1180614 bp Feature: gene Location: 1180620-1181843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1180812-1181430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8081 2-1 1 81 430 bp Feature: domain Description: GIIM Note: maturase Location: 1181478-1181691 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 81 478-1 1 81 691 bp Feature: gene Location: 1181968-1183341 bp Feature: domain Description: proY Location: 1181992-1183336 bp Feature: domain Description: proY Location: 1 1 81 992-1 1 83336 bp Feature: gene Location: 1183434-1184036 bp Feature: domain Description: PRK15000 Location: 1183437-1184034 bp Feature: domain Description: PRK1 5000 Location: 1 1 83437-1 1 84034 bp Feature: gene Location: 1516851-1518308 bp Feature: domain Description: PRK08292 Location: 1516878-1518306 bp Feature: domain Description: PRK08292 Location: 1 51 6878-1 51 8306 bp Feature: gene Location: 1518730-1519248 bp Feature: domain Description: VI_effect_Hcp1 Location: 1518739-1519234 bp Feature: domain Description: VI_effect_Hcp1 Location: 1 51 8739-1 51 9234 bp Feature: gene Location: 1519702-1521054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520023-1520641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 520023-1 520641 bp Feature: domain Description: GIIM Note: maturase Location: 1520689-1520902 bp Feature: domain Description: GIIM Note: maturase Location: 1 520689-1 520902 bp Feature: gene Location: 1521253-1523316 bp Feature: domain Description: VI_Rhs_Vgr Location: 1521307-1522834 bp Feature: domain Description: VI_Rhs_Vgr Location: 1 521 307-1 522834 bp Feature: gene Location: 1523326-1524696 bp Feature: domain Description: PAAR_1 Location: 1523332-1523623 bp Feature: domain Description: PAAR_1 Location: 1 523332-1 523623 bp Feature: domain Description: Lipase_3 Location: 1524238-1524283 bp Feature: domain Description: Lipase_3 Location: 1 524238-1 524283 bp Feature: gene Location: 4618536-4619570 bp Feature: domain Description: PRK11638 Location: 4618566-4619568 bp Feature: domain Description: PRK1 1 638 Location: 461 8566-461 9568 bp Feature: gene Location: 4619642-4620718 bp Feature: domain Description: PRK15119 Location: 4619648-4620707 bp Feature: domain Description: PRK1 51 1 9 Location: 461 9648-4620707 bp Feature: gene Location: 4620988-4622340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4621309-4621927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4621 309-4621 927 bp Feature: domain Description: GIIM Note: maturase Location: 4621975-4622188 bp Feature: domain Description: GIIM Note: maturase Location: 4621 975-46221 88 bp Feature: gene Location: 4622469-4622597 bp Feature: gene Location: 4622804-4624063 bp Feature: domain Description: rho Location: 4622810-4624055 bp Feature: domain Description: rho Location: 462281 0-4624055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4432 (pfam14486), PRK15409 (glyoxylate/hydroxypyruvate reductase GhrB), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), RVT-GII, GIIM (pfam08388), Cfa (COG2230), PRK13687 (hypothetical protein; Provisional), groES (PRK14533)
groEL (PRK12852), RVT_N (pfam13655), HNHc (smart00507), PRK15433 (branched-chain amino acid transporter carrier protein BrnQ), proY (PRK10580), PRK15000 (peroxiredoxin C), PRK08292 (AMP nucleosidase; Provisional), VI_effect_Hcp1 (TIGR03344), VI_Rhs_Vgr (TIGR03361), PAAR_1 (cd14737)
Lipase_3 (pfam01764), PRK11638 (ECA polysaccharide chain length modulation protein), PRK15119 (UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase), rho (TIGR00767)