myRT

myRT report for GCA_003051985.2_ASM305198v2

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Seq: CP028578.2 Escherichia coli strain WCHEC005784 chromosome, complete genome (4812358 bp)
Overview 1 RT 1: 516557-520317 bp 2 RT 2: 1909875-1914248 bp 3 RT 3: 2350150-2353960 bp 4 RT 4: 2721081-2724908 bp 5 RT 5: 3705895-3709562 bp 6 RT 6: 4167223-4170600 bp 7 RT 7: 4182945-4190740 bp Neighborhood of RT #1 [516557, 520319] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [1909875, 1914247] YkfC InsG RVT-GII GIIM PHA02517 PRK10002 Neighborhood of RT #3 [2350150, 2353962] InsE RVT-GII GIIM PHA02517 FimA Neighborhood of RT #4 [2721081, 2725305] Methyltransf_12 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [3705895, 3709562] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #6 [4167223, 4171029] COG2085 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #7 [4182945, 4190847] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 516557-517296 bp Feature: domain Description: InsE Location: 516560-516899 bp Feature: domain Description: InsE Location: 51 6560-51 6899 bp Feature: gene Location: 517289-517660 bp Feature: gene Location: 517954-519477 bp Ori: AVZ07799.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518227-518959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 8227-51 8959 bp Feature: domain Description: GIIM Note: maturase Location: 519034-519232 bp Feature: domain Description: GIIM Note: maturase Location: 51 9034-51 9232 bp Feature: gene Location: 519567-520040 bp Feature: domain Description: PHA02517 Location: 519573-520038 bp Feature: domain Description: PHA0251 7 Location: 51 9573-520038 bp Feature: gene Location: 520083-520319 bp Feature: domain Description: DUF1016_N Location: 520140-520317 bp Feature: domain Description: DUF1 01 6_N Location: 5201 40-52031 7 bp Feature: gene Location: 1909875-1910030 bp Ori: AVZ09044.1 Feature: domain Description: YkfC Location: 1909884-1910025 bp Feature: domain Description: YkfC Location: 1 909884-1 91 0025 bp Feature: gene Location: 1910197-1911309 bp Ori: AVZ09045.1 Feature: domain Description: InsG Location: 1910200-1911238 bp Feature: domain Description: InsG Location: 1 91 0200-1 91 1 238 bp Feature: gene Location: 1911366-1912748 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911498-1912230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 1 498-1 91 2230 bp Feature: domain Description: GIIM Note: maturase Location: 1912305-1912503 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 2305-1 91 2503 bp Feature: gene Location: 1912829-1913317 bp Feature: domain Description: PHA02517 Location: 1912832-1913306 bp Feature: domain Description: PHA0251 7 Location: 1 91 2832-1 91 3306 bp Feature: gene Location: 1913327-1914247 bp Feature: domain Description: PRK10002 Location: 1913330-1914248 bp Feature: domain Description: PRK1 0002 Location: 1 91 3330-1 91 4248 bp Feature: gene Location: 2350150-2350889 bp Feature: domain Description: InsE Location: 2350153-2350492 bp Feature: domain Description: InsE Location: 23501 53-2350492 bp Feature: gene Location: 2350882-2351253 bp Feature: gene Location: 2351547-2353070 bp Ori: AVZ09475.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2351820-2352552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2351 820-2352552 bp Feature: domain Description: GIIM Note: maturase Location: 2352627-2352825 bp Feature: domain Description: GIIM Note: maturase Location: 2352627-2352825 bp Feature: gene Location: 2353160-2353633 bp Feature: domain Description: PHA02517 Location: 2353166-2353631 bp Feature: domain Description: PHA0251 7 Location: 23531 66-2353631 bp Feature: gene Location: 2353675-2353962 bp Feature: domain Description: FimA Location: 2353681-2353960 bp Feature: domain Description: FimA Location: 2353681 -2353960 bp Feature: gene Location: 2721081-2721707 bp Ori: AVZ11831.1 Feature: domain Description: Methyltransf_12 Location: 2721213-2721504 bp Feature: domain Description: Methyltransf_1 2 Location: 2721 21 3-2721 504 bp Feature: gene Location: 2721822-2722295 bp Feature: domain Description: PHA02517 Location: 2721828-2722293 bp Feature: domain Description: PHA0251 7 Location: 2721 828-2722293 bp Feature: gene Location: 2722385-2723908 bp Ori: AVZ09794.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2722658-2723390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2722658-2723390 bp Feature: domain Description: GIIM Note: maturase Location: 2723465-2723663 bp Feature: domain Description: GIIM Note: maturase Location: 2723465-2723663 bp Feature: gene Location: 2724202-2724573 bp Feature: gene Location: 2724566-2725305 bp Feature: domain Description: InsE Location: 2724569-2724908 bp Feature: domain Description: InsE Location: 2724569-2724908 bp Feature: gene Location: 3705895-3706634 bp Feature: domain Description: InsE Location: 3705898-3706237 bp Feature: domain Description: InsE Location: 3705898-3706237 bp Feature: gene Location: 3706627-3706998 bp Feature: gene Location: 3707292-3708815 bp Ori: AVZ10720.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3707565-3708297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3707565-3708297 bp Feature: domain Description: GIIM Note: maturase Location: 3708372-3708570 bp Feature: domain Description: GIIM Note: maturase Location: 3708372-3708570 bp Feature: gene Location: 3708905-3709378 bp Feature: domain Description: PHA02517 Location: 3708911-3709376 bp Feature: domain Description: PHA0251 7 Location: 370891 1 -3709376 bp Feature: gene Location: 3709344-3709562 bp Feature: gene Location: 4167223-4167636 bp Ori: AVZ11137.1 Feature: domain Description: COG2085 Location: 4167322-4167469 bp Feature: domain Description: COG2085 Location: 41 67322-41 67469 bp Feature: gene Location: 4167563-4168050 bp Feature: domain Description: PHA02517 Location: 4167566-4167737 bp Feature: domain Description: PHA0251 7 Location: 41 67566-41 67737 bp Feature: gene Location: 4168131-4169654 bp Ori: AVZ11138.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168404-4169136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 68404-41 691 36 bp Feature: domain Description: GIIM Note: maturase Location: 4169211-4169409 bp Feature: domain Description: GIIM Note: maturase Location: 41 6921 1 -41 69409 bp Feature: gene Location: 4169948-4170385 bp Feature: gene Location: 4170312-4171029 bp Feature: domain Description: InsE Location: 4170351-4170600 bp Feature: domain Description: InsE Location: 41 70351 -41 70600 bp Feature: gene Location: 4182945-4183684 bp Feature: domain Description: InsE Location: 4182948-4183287 bp Feature: domain Description: InsE Location: 41 82948-41 83287 bp Feature: gene Location: 4183677-4184048 bp Feature: gene Location: 4184342-4185865 bp Ori: AVZ11151.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4184615-4185347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8461 5-41 85347 bp Feature: domain Description: GIIM Note: maturase Location: 4185422-4185620 bp Feature: domain Description: GIIM Note: maturase Location: 41 85422-41 85620 bp Feature: gene Location: 4185955-4186428 bp Feature: domain Description: PHA02517 Location: 4185961-4186426 bp Feature: domain Description: PHA0251 7 Location: 41 85961 -41 86426 bp Feature: gene Location: 4186431-4187572 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4186440-4186692 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 86440-41 86692 bp Feature: gene Location: 4188027-4188959 bp Ori: AVZ11152.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4188129-4188723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 881 29-41 88723 bp Feature: gene Location: 4188961-4189929 bp Feature: gene Location: 4190575-4190847 bp Ori: AVZ11154.1 Feature: domain Description: PRK09678 Location: 4190584-4190740 bp Feature: domain Description: PRK09678 Location: 41 90584-41 90740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YkfC (COG3344), InsG (COG3385), PRK10002 (porin OmpF), FimA (pfam16970), Methyltransf_12 (pfam08242)
COG2085 (Predicted dinucleotide-binding enzyme ), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)