myRT

myRT report for GCA_003054385.1_ASM305438v1

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Seq: CP028716.1 Klebsiella pneumoniae strain SCM96 chromosome, complete genome (5398745 bp)
Overview 1 RT 1: 5196835-5203688 bp Neighborhood of RT #1 [5196835, 5203705] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 5196835-5197500 bp Feature: domain Description: INT_P4_C Location: 5196940-5197498 bp Feature: domain Description: INT_P4_C Location: 51 96940-51 97498 bp Feature: gene Location: 5197761-5198201 bp Feature: domain Description: Integrase_1 Location: 5197767-5197983 bp Feature: domain Description: Integrase_1 Location: 51 97767-51 97983 bp Feature: gene Location: 5198258-5200336 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5198666-5199110 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 51 98666-51 991 1 0 bp Feature: gene Location: 5200336-5202945 bp Feature: domain Description: FimD Location: 5200393-5202934 bp Feature: domain Description: FimD Location: 5200393-5202934 bp Feature: gene Location: 5202977-5203705 bp Feature: domain Description: FimC Location: 5203025-5203688 bp Feature: domain Description: FimC Location: 5203025-5203688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: CP028717.1 Klebsiella pneumoniae strain SCM96 plasmid pSCM96-1, complete sequence (134869 bp)
Overview 1 RT 1: 68690-72879 bp Neighborhood of RT #1 [68690, 72879] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 68690-69361 bp Feature: domain Description: Plasmid_stab_B Location: 68705-68912 bp Feature: domain Description: Plasmid_stab_B Location: 68705-68912 bp Feature: domain Description: Plasmid_stab_B Location: 69017-69224 bp Feature: domain Description: Plasmid_stab_B Location: 69017-692 2 4 bp Feature: gene Location: 69364-70335 bp Feature: domain Description: StbA Location: 69367-70312 bp Feature: domain Description: StbA Location: 69367-70312 bp Feature: gene Location: 70584-72071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70989-71679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70989-71679 bp Feature: gene Location: 72225-72461 bp Feature: gene Location: 72484-72879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII