myRT

myRT report for GCA_003060845.1_ASM306084v1

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Seq: CP028917.1 Pseudomonas aeruginosa strain JB2 chromosome, complete genome (6867314 bp)
Overview 1 RT 1: 639727-648559 bp 2 RT 2: 2315553-2321806 bp Neighborhood of RT #1 [639727, 648588] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #2 [2315553, 2321806] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII IS5 Feature: gene Location: 639727-640941 bp Feature: domain Description: PRK10770 Location: 639739-640933 bp Feature: domain Description: PRK1 0770 Location: 639739-640933 bp Feature: gene Location: 641000-643783 bp Feature: domain Description: LptD Location: 641195-643769 bp Feature: domain Description: LptD Location: 641 1 95-643769 bp Feature: gene Location: 643916-645628 bp Feature: domain Description: RVT_N Location: 643973-644216 bp Feature: domain Description: RVT_N Location: 643973-64421 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644261-644897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644261 -644897 bp Feature: domain Description: YkfC Location: 645104-645257 bp Feature: domain Description: YkfC Location: 6451 04-645257 bp Feature: domain Description: HNH Note: nucleases Location: 645434-645572 bp Feature: domain Description: HNH Note: nucleases Location: 645434-645572 bp Feature: gene Location: 646901-647917 bp Feature: domain Description: COG3178 Location: 646904-647903 bp Feature: domain Description: COG31 78 Location: 646904-647903 bp Feature: gene Location: 647914-648588 bp Feature: domain Description: NTP_transferase_like_1 Location: 647920-648559 bp Feature: domain Description: NTP_transferase_like_1 Location: 647920-648559 bp Feature: gene Location: 2315553-2317088 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2315694-2315907 bp Feature: domain Description: LZ_Tnp_IS66 Location: 231 5694-231 5907 bp Feature: domain Description: zf-IS66 Location: 2315928-2316054 bp Feature: domain Description: zf-IS66 Location: 231 5928-231 6054 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2316096-2316939 bp Feature: domain Description: DDE_Tnp_IS66 Location: 231 6096-231 6939 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2316960-2317071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 231 6960-231 7071 bp Feature: gene Location: 2317152-2317487 bp Feature: domain Description: TnpB_IS66 Location: 2317170-2317458 bp Feature: domain Description: TnpB_IS66 Location: 231 71 70-231 7458 bp Feature: gene Location: 2318455-2319423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2318659-2319271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 8659-231 9271 bp Feature: gene Location: 2319683-2320663 bp Feature: domain Description: IS5 Location: 2319872-2320631 bp Feature: domain Description: IS5 Location: 231 9872-2320631 bp Feature: gene Location: 2321591-2321806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), IS5 (COG3039)