myRT

myRT report for GCA_003073375.1_ASM307337v1

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Seq: CP029002.1 Lysinibacillus sp. 2017 chromosome, complete genome (3737915 bp)
Overview 1 RT 1: 588839-598180 bp 2 RT 2: 712381-723411 bp 3 RT 3: 835098-839791 bp 4 RT 4: 2272158-2279147 bp 5 RT 5: 2424827-2431230 bp Neighborhood of RT #1 [588839, 599247] SLH SLH SLH RVT-GII GIIM SLH SLH SLH Big_5 Big_5 Big_5 Big_5 Cu_amine_oxidN1 Cu_amine_oxidN1 Cu_amine_oxidN1 Neighborhood of RT #2 [712381, 723416] addB_Gpos addA_Gpos RVT-GII Intron_maturas2 HNHc addA_Gpos YeiB Neighborhood of RT #3 [835098, 839796] PRK06416 RVT-GII GIIM YohJ LrgB Neighborhood of RT #4 [2272158, 2279149] GDPD_TtGDE_like FapA RVT-GII GIIM RVT-GII GIIM spore_0_A Neighborhood of RT #5 [2424827, 2431235] Tar TcdA RVT-GII GIIM aspS Feature: gene Location: 588839-591664 bp Ori: AWE06350.1 Feature: domain Description: SLH Location: 588929-589058 bp Feature: domain Description: SLH Location: 588929-589058 bp Feature: domain Description: SLH Location: 589106-589232 bp Feature: domain Description: SLH Location: 5891 06-589232 bp Feature: domain Description: SLH Location: 589283-589415 bp Feature: domain Description: SLH Location: 589283-58941 5 bp Feature: gene Location: 591785-591967 bp Feature: gene Location: 592258-593517 bp Ori: AWE09206.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592462-593077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592462-593077 bp Feature: domain Description: GIIM Note: maturase Location: 593134-593362 bp Feature: domain Description: GIIM Note: maturase Location: 5931 34-593362 bp Feature: gene Location: 594307-597078 bp Ori: AWE06352.1 Feature: domain Description: SLH Location: 594397-594526 bp Feature: domain Description: SLH Location: 594397-594526 bp Feature: domain Description: SLH Location: 594574-594700 bp Feature: domain Description: SLH Location: 594574-594700 bp Feature: domain Description: SLH Location: 594751-594883 bp Feature: domain Description: SLH Location: 594751 -594883 bp Feature: domain Description: Big_5 Location: 595240-595429 bp Feature: domain Description: Big_5 Location: 595240-595429 bp Feature: domain Description: Big_5 Location: 595501-595756 bp Feature: domain Description: Big_5 Location: 595501 -595756 bp Feature: domain Description: Big_5 Location: 596488-596707 bp Feature: domain Description: Big_5 Location: 596488-596707 bp Feature: domain Description: Big_5 Location: 596761-597043 bp Feature: domain Description: Big_5 Location: 596761 -597043 bp Feature: gene Location: 597301-599247 bp Ori: AWE06353.1 Feature: domain Description: Cu_amine_oxidN1 Location: 597385-597547 bp Feature: domain Description: Cu_amine_oxidN1 Location: 597385-597547 bp Feature: domain Description: Cu_amine_oxidN1 Location: 597823-597946 bp Feature: domain Description: Cu_amine_oxidN1 Location: 597823-597946 bp Feature: domain Description: Cu_amine_oxidN1 Location: 597997-598180 bp Feature: domain Description: Cu_amine_oxidN1 Location: 597997-5981 80 bp Feature: gene Location: 712381-716013 bp Ori: AWE06428.1 Gene: addB Feature: domain Description: addB_Gpos Location: 712384-715975 bp Feature: domain Description: addB_Gpos Location: 71 2384-71 5975 bp Feature: gene Location: 715988-717355 bp Feature: domain Description: addA_Gpos Location: 716021-717356 bp Feature: domain Description: addA_Gpos Location: 71 6021 -71 7356 bp Feature: gene Location: 717957-719774 bp Ori: AWE06429.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718221-719052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 8221 -71 9052 bp Feature: domain Description: Intron_maturas2 Location: 719223-719472 bp Feature: domain Description: Intron_maturas2 Location: 71 9223-71 9472 bp Feature: domain Description: HNHc Note: nucleases Location: 719598-719763 bp Feature: domain Description: HNHc Note: nucleases Location: 71 9598-71 9763 bp Feature: gene Location: 719887-722241 bp Gene: addA Feature: domain Description: addA_Gpos Location: 719890-722230 bp Feature: domain Description: addA_Gpos Location: 71 9890-722230 bp Feature: gene Location: 722253-723416 bp Ori: AWE06430.1 Feature: domain Description: YeiB Location: 722265-723411 bp Feature: domain Description: YeiB Location: 722265-72341 1 bp Feature: gene Location: 835098-836510 bp Ori: AWE06528.1 Gene: lpdA Feature: domain Description: PRK06416 Location: 835122-836499 bp Feature: domain Description: PRK0641 6 Location: 8351 22-836499 bp Feature: gene Location: 836604-836786 bp Feature: gene Location: 837077-838336 bp Ori: AWE09218.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837281-837896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837281 -837896 bp Feature: domain Description: GIIM Note: maturase Location: 837953-838181 bp Feature: domain Description: GIIM Note: maturase Location: 837953-8381 81 bp Feature: gene Location: 838731-839144 bp Ori: AWE06530.1 Feature: domain Description: YohJ Location: 838737-839103 bp Feature: domain Description: YohJ Location: 838737-8391 03 bp Feature: gene Location: 839110-839796 bp Ori: AWE06531.1 Feature: domain Description: LrgB Location: 839119-839791 bp Feature: domain Description: LrgB Location: 8391 1 9-839791 bp Feature: gene Location: 2272158-2272874 bp Ori: AWE07880.1 Feature: domain Description: GDPD_TtGDE_like Location: 2272176-2272845 bp Feature: domain Description: GDPD_TtGDE_like Location: 22721 76-2272845 bp Feature: gene Location: 2272874-2274445 bp Ori: AWE07881.1 Feature: domain Description: FapA Location: 2273090-2274428 bp Feature: domain Description: FapA Location: 2273090-2274428 bp Feature: gene Location: 2275190-2276449 bp Ori: AWE09281.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275394-2276009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275394-2276009 bp Feature: domain Description: GIIM Note: maturase Location: 2276066-2276294 bp Feature: domain Description: GIIM Note: maturase Location: 2276066-2276294 bp Feature: gene Location: 2276740-2276922 bp Feature: gene Location: 2277051-2278310 bp Ori: AWE09282.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2277255-2277870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2277255-2277870 bp Feature: domain Description: GIIM Note: maturase Location: 2277927-2278155 bp Feature: domain Description: GIIM Note: maturase Location: 2277927-22781 55 bp Feature: gene Location: 2278601-2278783 bp Feature: gene Location: 2278985-2279149 bp Feature: domain Description: spore_0_A Location: 2278988-2279147 bp Feature: domain Description: spore_0_A Location: 2278988-22791 47 bp Feature: gene Location: 2424827-2426287 bp Ori: AWE08029.1 Feature: domain Description: Tar Location: 2425241-2426222 bp Feature: domain Description: Tar Location: 2425241 -2426222 bp Feature: gene Location: 2426365-2427126 bp Ori: AWE08030.1 Feature: domain Description: TcdA Location: 2426371-2427106 bp Feature: domain Description: TcdA Location: 2426371 -24271 06 bp Feature: gene Location: 2427304-2428563 bp Ori: AWE09292.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427508-2428123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427508-24281 23 bp Feature: domain Description: GIIM Note: maturase Location: 2428180-2428408 bp Feature: domain Description: GIIM Note: maturase Location: 24281 80-2428408 bp Feature: gene Location: 2428854-2429036 bp Feature: gene Location: 2429469-2431235 bp Ori: AWE08032.1 Feature: domain Description: aspS Location: 2429475-2431230 bp Feature: domain Description: aspS Location: 2429475-2431 230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), RVT-GII, GIIM (pfam08388), Big_5 (pfam13205), Cu_amine_oxidN1 (pfam07833), addB_Gpos (TIGR02773), addA_Gpos (TIGR02785), Intron_maturas2 (pfam01348), HNHc (smart00507), YeiB (COG2311)
PRK06416 (dihydrolipoamide dehydrogenase; Reviewed), YohJ (COG1380), LrgB (pfam04172), GDPD_TtGDE_like (cd08563), FapA (pfam03961), spore_0_A (TIGR02875), Tar (COG0840), TcdA (COG1179), aspS (PRK00476)