myRT

myRT report for GCA_003073735.1_ASM307373v1

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Seq: CP029088.1 Pseudomonas aeruginosa strain AR445 chromosome, complete genome (7125975 bp)
Overview 1 RT 1: 680185-690490 bp 2 RT 2: 706748-715568 bp 3 RT 3: 1219391-1226201 bp 4 RT 4: 5301828-5307512 bp Neighborhood of RT #1 [680185, 690492] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [706748, 715597] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [1219391, 1226398] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #4 [5301828, 5307517] SdhE RVT_N RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 680185-681306 bp Ori: AWE72170.1 Feature: domain Description: COG3177 Location: 680203-681295 bp Feature: domain Description: COG31 77 Location: 680203-681 295 bp Feature: gene Location: 681565-681684 bp Feature: gene Location: 682029-683714 bp Ori: AWE69129.1 Feature: domain Description: RVT_N Location: 682086-682326 bp Feature: domain Description: RVT_N Location: 682086-682326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682374-683010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682374-68301 0 bp Feature: domain Description: GIIM Note: maturase Location: 683064-683295 bp Feature: domain Description: GIIM Note: maturase Location: 683064-683295 bp Feature: domain Description: HNH Note: nucleases Location: 683547-683685 bp Feature: domain Description: HNH Note: nucleases Location: 683547-683685 bp Feature: gene Location: 684795-688532 bp Ori: AWE71119.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 684903-685560 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 684903-685560 bp Feature: domain Description: PRK09776 Location: 685773-686244 bp Feature: domain Description: PRK09776 Location: 685773-686244 bp Feature: domain Description: PAS Location: 686301-686826 bp Feature: domain Description: PAS Location: 686301 -686826 bp Feature: domain Description: PRK10060 Location: 686838-688482 bp Feature: domain Description: PRK1 0060 Location: 686838-688482 bp Feature: gene Location: 688639-690492 bp Ori: AWE70792.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 688651-690490 bp Feature: domain Description: PRK05658 Location: 688651 -690490 bp Feature: gene Location: 706748-707962 bp Ori: AWE71352.1 Gene: surA Feature: domain Description: PRK10770 Location: 706760-707954 bp Feature: domain Description: PRK1 0770 Location: 706760-707954 bp Feature: gene Location: 708021-710792 bp Ori: AWE71127.1 Feature: domain Description: LptD Location: 708216-710778 bp Feature: domain Description: LptD Location: 70821 6-71 0778 bp Feature: gene Location: 710925-712637 bp Ori: AWE70799.1 Feature: domain Description: RVT_N Location: 710982-711225 bp Feature: domain Description: RVT_N Location: 71 0982-71 1 225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711270-711906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 1 270-71 1 906 bp Feature: domain Description: YkfC Location: 712116-712266 bp Feature: domain Description: YkfC Location: 71 21 1 6-71 2266 bp Feature: domain Description: HNH Note: nucleases Location: 712443-712581 bp Feature: domain Description: HNH Note: nucleases Location: 71 2443-71 2581 bp Feature: gene Location: 713910-714926 bp Ori: AWE68736.1 Feature: domain Description: COG3178 Location: 713913-714912 bp Feature: domain Description: COG31 78 Location: 71 391 3-71 491 2 bp Feature: gene Location: 714923-715597 bp Ori: AWE68302.1 Feature: domain Description: NTP_transferase_like_1 Location: 714929-715568 bp Feature: domain Description: NTP_transferase_like_1 Location: 71 4929-71 5568 bp Feature: gene Location: 1219391-1220218 bp Ori: AWE73907.1 Feature: domain Description: ABC_phnC Location: 1219421-1220135 bp Feature: domain Description: ABC_phnC Location: 1 21 9421 -1 2201 35 bp Feature: gene Location: 1220561-1221202 bp Ori: AWE73027.1 Feature: domain Description: DUF772 Location: 1220711-1220906 bp Feature: domain Description: DUF772 Location: 1 22071 1 -1 220906 bp Feature: gene Location: 1221600-1222859 bp Ori: AWE69349.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221804-1222461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 221 804-1 222461 bp Feature: domain Description: GIIM Note: maturase Location: 1222539-1222761 bp Feature: domain Description: GIIM Note: maturase Location: 1 222539-1 222761 bp Feature: gene Location: 1223591-1223764 bp Feature: gene Location: 1224854-1226398 bp Ori: AWE70579.1 Feature: domain Description: CHD Location: 1225070-1225484 bp Feature: domain Description: CHD Location: 1 225070-1 225484 bp Feature: domain Description: CHD Location: 1225712-1226201 bp Feature: domain Description: CHD Location: 1 22571 2-1 226201 bp Feature: gene Location: 5301828-5302280 bp Feature: gene Location: 5302264-5302518 bp Ori: AWE69212.1 Feature: domain Description: SdhE Location: 5302270-5302510 bp Feature: domain Description: SdhE Location: 5302270-530251 0 bp Feature: gene Location: 5302594-5304315 bp Ori: AWE72125.1 Feature: domain Description: RVT_N Location: 5302651-5302888 bp Feature: domain Description: RVT_N Location: 5302651 -5302888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302939-5303575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302939-5303575 bp Feature: domain Description: YkfC Location: 5303773-5303929 bp Feature: domain Description: YkfC Location: 5303773-5303929 bp Feature: domain Description: HNH Note: nucleases Location: 5304112-5304250 bp Feature: domain Description: HNH Note: nucleases Location: 53041 1 2-5304250 bp Feature: gene Location: 5305636-5306580 bp Ori: AWE74572.1 Feature: domain Description: YgfZ Location: 5305645-5306545 bp Feature: domain Description: YgfZ Location: 5305645-5306545 bp Feature: gene Location: 5306681-5307517 bp Ori: AWE73269.1 Feature: domain Description: HDOD Location: 5306684-5307512 bp Feature: domain Description: HDOD Location: 5306684-530751 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), SdhE (COG2938), YgfZ (COG0354)
HDOD (pfam08668)