myRT

myRT report for GCA_003073835.1_ASM307383v1

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Seq: CP029118.1 Escherichia coli strain AR435 plasmid unnamed5, complete sequence (187909 bp)
Overview 1 RT 1: 141462-147519 bp Neighborhood of RT #1 [141462, 147519] HD_2 RVT-GII GIIM PRK06850 Feature: gene Location: 141462-141584 bp Feature: gene Location: 141647-142216 bp Ori: AWF23854.1 Feature: domain Description: HD_2 Location: 141656-142142 bp Feature: domain Description: HD_2 Location: 1 41 656-1 421 42 bp Feature: gene Location: 142773-144161 bp Ori: AWF23852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143103-143721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 431 03-1 43721 bp Feature: domain Description: GIIM Note: maturase Location: 143775-143988 bp Feature: domain Description: GIIM Note: maturase Location: 1 43775-1 43988 bp Feature: gene Location: 144646-147099 bp Ori: AWF24001.1 Feature: domain Description: PRK06850 Location: 144835-146005 bp Feature: domain Description: PRK06850 Location: 1 44835-1 46005 bp Feature: gene Location: 147187-147519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HD_2 (pfam12917), RVT-GII, GIIM (pfam08388), PRK06850 (hypothetical protein; Provisional)

Seq: CP029115.1 Escherichia coli strain AR435 chromosome, complete genome (4831922 bp)
Overview 1 RT 1: 676618-682967 bp 2 RT 2: 695513-699015 bp 3 RT 3: 1153302-1157347 bp 4 RT 4: 2105616-2111005 bp 5 RT 5: 4006305-4011642 bp 6 RT 6: 4313797-4317168 bp Neighborhood of RT #1 [676618, 682967] RVT-Retrons Arm-DNA-bind_3 PRK09692 PHA02517 RVT-GII GIIM YkfC Neighborhood of RT #2 [695513, 699015] PHA02517 RVT-GII GIIM Neighborhood of RT #3 [1153302, 1157412] QdoI PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2105616, 2111070] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4006305, 4011650] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Neighborhood of RT #6 [4313797, 4317233] DUF1016_N PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 676618-676767 bp Feature: gene Location: 677086-678054 bp Feature: gene Location: 678056-678988 bp Ori: AWF23034.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 678158-678752 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 678158-678752 bp Feature: gene Location: 679443-679745 bp Ori: AWF20151.1 Feature: domain Description: Arm-DNA-bind_3 Location: 679452-679704 bp Feature: domain Description: Arm-DNA-bind_3 Location: 679452 -679704 bp Feature: gene Location: 679805-680356 bp Ori: AWF19150.1 Feature: domain Description: PRK09692 Location: 679811-680354 bp Feature: domain Description: PRK09692 Location: 679811-680354 bp Feature: gene Location: 680587-680958 bp Ori: AWF22567.1 Feature: domain Description: PHA02517 Location: 680590-680956 bp Feature: domain Description: PHA02 517 Location: 680590-680956 bp Feature: gene Location: 681150-682496 bp Ori: AWF21256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681246-681978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6812 46-681978 bp Feature: domain Description: GIIM Note: maturase Location: 682053-682251 bp Feature: domain Description: GIIM Note: maturase Location: 682 053-682 2 51 bp Feature: gene Location: 682505-682672 bp Ori: AWF21160.1 Feature: domain Description: YkfC Location: 682514-682658 bp Feature: domain Description: YkfC Location: 682 514-682 658 bp Feature: gene Location: 682854-682967 bp Feature: gene Location: 695513-695992 bp Ori: AWF22803.1 Feature: domain Description: PHA02517 Location: 695573-695927 bp Feature: domain Description: PHA02 517 Location: 695573-69592 7 bp Feature: gene Location: 696289-696402 bp Feature: gene Location: 696599-698107 bp Ori: AWF23253.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696857-697589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696857-697589 bp Feature: domain Description: GIIM Note: maturase Location: 697664-697862 bp Feature: domain Description: GIIM Note: maturase Location: 697664-697862 bp Feature: gene Location: 698302-698436 bp Feature: gene Location: 698758-699015 bp Feature: gene Location: 1153302-1153652 bp Ori: AWF19778.1 Feature: domain Description: QdoI Location: 1153368-1153620 bp Feature: domain Description: QdoI Location: 1153368-115362 0 bp Feature: gene Location: 1154255-1154626 bp Ori: AWF20951.1 Feature: domain Description: PHA02517 Location: 1154258-1154624 bp Feature: domain Description: PHA02 517 Location: 11542 58-115462 4 bp Feature: gene Location: 1154818-1156326 bp Ori: AWF23361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155076-1155808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155076-1155808 bp Feature: domain Description: GIIM Note: maturase Location: 1155883-1156081 bp Feature: domain Description: GIIM Note: maturase Location: 1155883-1156081 bp Feature: gene Location: 1156523-1156636 bp Feature: gene Location: 1156933-1157412 bp Ori: AWF23267.1 Feature: domain Description: PHA02517 Location: 1156993-1157347 bp Feature: domain Description: PHA02 517 Location: 1156993-1157347 bp Feature: gene Location: 2105616-2107910 bp Feature: gene Location: 2107913-2108284 bp Ori: AWF21918.1 Feature: domain Description: PHA02517 Location: 2107916-2108282 bp Feature: domain Description: PHA02 517 Location: 2 107916-2 1082 82 bp Feature: gene Location: 2108476-2109984 bp Ori: AWF20658.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2108734-2109466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 108734-2 109466 bp Feature: domain Description: GIIM Note: maturase Location: 2109541-2109739 bp Feature: domain Description: GIIM Note: maturase Location: 2 109541-2 109739 bp Feature: gene Location: 2110181-2110294 bp Feature: gene Location: 2110591-2111070 bp Ori: AWF22737.1 Feature: domain Description: PHA02517 Location: 2110651-2111005 bp Feature: domain Description: PHA02 517 Location: 2 110651-2 111005 bp Feature: gene Location: 4006305-4007222 bp Ori: AWF20661.1 Feature: domain Description: PFLE_PFLC Location: 4006341-4007196 bp Feature: domain Description: PFLE_PFLC Location: 4006341-4007196 bp Feature: gene Location: 4007359-4008264 bp Feature: gene Location: 4008750-4009289 bp Ori: AWF19334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009080-4009158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009080-4009158 bp Feature: gene Location: 4009317-4009838 bp Ori: AWF22122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009323-4009605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400932 3-4009605 bp Feature: domain Description: GIIM Note: maturase Location: 4009653-4009833 bp Feature: domain Description: GIIM Note: maturase Location: 4009653-4009833 bp Feature: gene Location: 4010226-4010348 bp Feature: gene Location: 4010388-4011650 bp Ori: AWF20186.1 Feature: domain Description: YesM Location: 4010901-4011642 bp Feature: domain Description: YesM Location: 4010901-4011642 bp Feature: gene Location: 4313797-4314036 bp Ori: AWF21770.1 Feature: domain Description: DUF1016_N Location: 4313854-4314031 bp Feature: domain Description: DUF1016_N Location: 4313854-4314031 bp Feature: gene Location: 4314076-4314447 bp Ori: AWF20879.1 Feature: domain Description: PHA02517 Location: 4314079-4314445 bp Feature: domain Description: PHA02 517 Location: 4314079-4314445 bp Feature: gene Location: 4314639-4316147 bp Ori: AWF20274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4314897-4315629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4314897-431562 9 bp Feature: domain Description: GIIM Note: maturase Location: 4315704-4315902 bp Feature: domain Description: GIIM Note: maturase Location: 4315704-4315902 bp Feature: gene Location: 4316344-4316457 bp Feature: gene Location: 4316754-4317233 bp Ori: AWF19803.1 Feature: domain Description: PHA02517 Location: 4316814-4317168 bp Feature: domain Description: PHA02 517 Location: 4316814-4317168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PRK09692 (Integrase; provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YkfC (COG3344), QdoI (COG1917), PFLE_PFLC (TIGR02494), YesM (COG2972)
DUF1016_N (pfam17761)