myRT

myRT report for GCA_003073895.1_ASM307389v1

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Seq: CP029097.1 Pseudomonas aeruginosa strain AR439 chromosome, complete genome (7139518 bp)
Overview 1 RT 1: 6585891-6594750 bp 2 RT 2: 6611014-6621311 bp Neighborhood of RT #1 [6585891, 6594758] NTP_transferase_like_1 COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [6611014, 6621322] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 6585891-6586565 bp Ori: AWF00505.1 Feature: domain Description: NTP_transferase_like_1 Location: 6585897-6586536 bp Feature: domain Description: NTP_transferase_like_1 Location: 6585897-6586536 bp Feature: gene Location: 6586562-6587578 bp Ori: AWF00318.1 Feature: domain Description: COG3178 Location: 6586565-6587564 bp Feature: domain Description: COG31 78 Location: 6586565-6587564 bp Feature: gene Location: 6589253-6590563 bp Ori: AWE99072.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6589256-6589832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6589256-6589832 bp Feature: domain Description: YkfC Location: 6590039-6590192 bp Feature: domain Description: YkfC Location: 6590039-65901 92 bp Feature: domain Description: HNH Note: nucleases Location: 6590369-6590507 bp Feature: domain Description: HNH Note: nucleases Location: 6590369-6590507 bp Feature: gene Location: 6590714-6593485 bp Ori: AWF02133.1 Feature: domain Description: LptD Location: 6590891-6593471 bp Feature: domain Description: LptD Location: 6590891 -6593471 bp Feature: gene Location: 6593544-6594758 bp Ori: AWE96897.1 Gene: surA Feature: domain Description: PRK10770 Location: 6593556-6594750 bp Feature: domain Description: PRK1 0770 Location: 6593556-6594750 bp Feature: gene Location: 6611014-6612867 bp Ori: AWE97856.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 6611026-6612865 bp Feature: domain Description: PRK05658 Location: 661 1 026-661 2865 bp Feature: gene Location: 6612974-6616711 bp Ori: AWE99853.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 6613082-6613739 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 661 3082-661 3739 bp Feature: domain Description: PRK09776 Location: 6613952-6614423 bp Feature: domain Description: PRK09776 Location: 661 3952-661 4423 bp Feature: domain Description: PAS Location: 6614480-6615005 bp Feature: domain Description: PAS Location: 661 4480-661 5005 bp Feature: domain Description: PRK10060 Location: 6615014-6616661 bp Feature: domain Description: PRK1 0060 Location: 661 501 4-661 6661 bp Feature: gene Location: 6617792-6619477 bp Ori: AWF01282.1 Feature: domain Description: RVT_N Location: 6617849-6618089 bp Feature: domain Description: RVT_N Location: 661 7849-661 8089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6618137-6618773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661 81 37-661 8773 bp Feature: domain Description: GIIM Note: maturase Location: 6618827-6619058 bp Feature: domain Description: GIIM Note: maturase Location: 661 8827-661 9058 bp Feature: domain Description: HNH Note: nucleases Location: 6619310-6619448 bp Feature: domain Description: HNH Note: nucleases Location: 661 931 0-661 9448 bp Feature: gene Location: 6619805-6619942 bp Feature: gene Location: 6620201-6621322 bp Ori: AWE99372.1 Feature: domain Description: COG3177 Location: 6620219-6621311 bp Feature: domain Description: COG31 77 Location: 662021 9-6621 31 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein )