myRT

myRT report for GCA_003073955.1_ASM307395v1

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Seq: CP029122.1 Escherichia coli strain AR434 chromosome, complete genome (4695904 bp)
Overview 1 RT 1: 351346-355226 bp 2 RT 2: 4557436-4561365 bp Neighborhood of RT #1 [351346, 355231] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [4557436, 4561365] INT_Rci_Hp1_C PRK10597 RVT-UG17 Feature: gene Location: 351346-352062 bp Ori: AWF28606.1 Gene: rph Feature: domain Description: rph Location: 351349-352057 bp Feature: domain Description: rph Location: 351 349-352057 bp Feature: gene Location: 352129-352770 bp Ori: AWF28099.1 Gene: pyrE Feature: domain Description: pyrE Location: 352132-352765 bp Feature: domain Description: pyrE Location: 3521 32-352765 bp Feature: gene Location: 353068-354027 bp Ori: AWF28252.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 353203-353752 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 353203-353752 bp Feature: gene Location: 354073-354669 bp Ori: AWF26640.1 Gene: slmA Feature: domain Description: slmA Location: 354079-354655 bp Feature: domain Description: slmA Location: 354079-354655 bp Feature: gene Location: 354776-355231 bp Ori: AWF25018.1 Gene: dut Feature: domain Description: dut Location: 354779-355226 bp Feature: domain Description: dut Location: 354779-355226 bp Feature: gene Location: 4557436-4558533 bp Ori: AWF28496.1 Feature: domain Description: INT_Rci_Hp1_C Location: 4557976-4558447 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 4557976-4558447 bp Feature: gene Location: 4558594-4558842 bp Ori: AWF25669.1 Feature: domain Description: PRK10597 Location: 4558597-4558837 bp Feature: domain Description: PRK1 0597 Location: 4558597-4558837 bp Feature: gene Location: 4559594-4560964 bp Ori: AWF24165.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4559822-4560428 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4559822-4560428 bp Feature: gene Location: 4561072-4561206 bp Feature: gene Location: 4561222-4561365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), INT_Rci_Hp1_C (cd00796), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-UG17

Seq: CP029123.1 Escherichia coli strain AR434 plasmid unnamed1, complete sequence (97471 bp)
Overview 1 RT 1: 46212-55623 bp Neighborhood of RT #1 [46212, 55628] DUF4158 DDE_Tnp_Tn3 COG3547 RVT-GII Big_3_3 SPO0J_N KorB BcsQ Feature: gene Location: 46212-48812 bp Ori: AWF28678.1 Feature: domain Description: DUF4158 Location: 46221-46347 bp Feature: domain Description: DUF4158 Location: 462 2 1-46347 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 47583-48744 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 47583-48744 bp Feature: gene Location: 48891-49895 bp Ori: AWF28706.1 Feature: domain Description: COG3547 Location: 48909-49863 bp Feature: domain Description: COG3547 Location: 48909-49863 bp Feature: gene Location: 50363-52687 bp Ori: AWF28660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50555-50873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50555-50873 bp Feature: domain Description: Big_3_3 Location: 51128-51584 bp Feature: domain Description: Big_3_3 Location: 5112 8-51584 bp Feature: gene Location: 53658-54839 bp Ori: AWF28671.1 Feature: domain Description: SPO0J_N Location: 53736-54018 bp Feature: domain Description: SPO0J_N Location: 53736-54018 bp Feature: domain Description: KorB Location: 54063-54321 bp Feature: domain Description: KorB Location: 54063-5432 1 bp Feature: gene Location: 54843-55628 bp Ori: AWF28665.1 Feature: domain Description: BcsQ Location: 54846-55623 bp Feature: domain Description: BcsQ Location: 54846-5562 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), COG3547 (Transposase ), RVT-GII, Big_3_3 (pfam13750), SPO0J_N (cd16393), KorB (pfam08535), BcsQ (COG1192)