myRT

myRT report for GCA_003122365.1_ASM312236v1

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Seq: CP029254.1 Streptomyces spongiicola strain HNM0071 chromosome, complete genome (7180417 bp)
Overview 1 RT 1: 2489125-2493301 bp 2 RT 2: 2761552-2766863 bp 3 RT 3: 4008848-4015949 bp 4 RT 4: 5735410-5741317 bp Neighborhood of RT #1 [2489125, 2493333] CypX RVT-GII GIIM DDE_Tnp_1_assoc CypX Neighborhood of RT #2 [2761552, 2766973] DDE_Tnp_1_4 RVT-GII GIIM HTH_Tnp_ISL3 Neighborhood of RT #3 [4008848, 4015949] DUF772 DDE_Tnp_1_6 COG3547 RVT-GII GIIM COG5421 Neighborhood of RT #4 [5735410, 5742018] SpaA SpaA RVT-Retrons DnaC COG4584 COG4584 Feature: gene Location: 2489125-2489304 bp Ori: AWK09322.1 Feature: domain Description: CypX Location: 2489131-2489257 bp Feature: domain Description: CypX Location: 24891 31 -2489257 bp Feature: gene Location: 2489405-2489632 bp Feature: gene Location: 2489743-2491212 bp Ori: AWK09323.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2490085-2490766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2490085-2490766 bp Feature: domain Description: GIIM Note: maturase Location: 2490838-2491072 bp Feature: domain Description: GIIM Note: maturase Location: 2490838-2491 072 bp Feature: gene Location: 2491804-2492770 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2491861-2492131 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 2491 861 -24921 31 bp Feature: gene Location: 2492893-2493333 bp Ori: AWK09324.1 Feature: domain Description: CypX Location: 2492905-2493301 bp Feature: domain Description: CypX Location: 2492905-2493301 bp Feature: gene Location: 2761552-2761785 bp Feature: gene Location: 2761907-2763295 bp Ori: AWK09511.1 Feature: domain Description: DDE_Tnp_1_4 Location: 2761943-2763266 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2761 943-2763266 bp Feature: gene Location: 2764001-2765191 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764175-2764793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27641 75-2764793 bp Feature: domain Description: GIIM Note: maturase Location: 2764937-2765096 bp Feature: domain Description: GIIM Note: maturase Location: 2764937-2765096 bp Feature: gene Location: 2766139-2766659 bp Feature: gene Location: 2766716-2766973 bp Ori: AWK09512.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 2766722-2766863 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2766722-2766863 bp Feature: gene Location: 4008848-4010554 bp Ori: AWK10419.1 Feature: domain Description: DUF772 Location: 4009001-4009220 bp Feature: domain Description: DUF772 Location: 4009001 -4009220 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4010108-4010474 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 401 01 08-401 0474 bp Feature: gene Location: 4010609-4011541 bp Ori: AWK10420.1 Feature: domain Description: COG3547 Location: 4010612-4011452 bp Feature: domain Description: COG3547 Location: 401 061 2-401 1 452 bp Feature: gene Location: 4011683-4013113 bp Ori: AWK12980.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4012004-4012688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 2004-401 2688 bp Feature: domain Description: GIIM Note: maturase Location: 4012760-4012985 bp Feature: domain Description: GIIM Note: maturase Location: 401 2760-401 2985 bp Feature: gene Location: 4013369-4015066 bp Ori: AWK12981.1 Feature: domain Description: COG5421 Location: 4013939-4014887 bp Feature: domain Description: COG5421 Location: 401 3939-401 4887 bp Feature: gene Location: 4015659-4015949 bp Feature: gene Location: 5735410-5736453 bp Ori: AWK11644.1 Feature: domain Description: SpaA Location: 5735602-5735740 bp Feature: domain Description: SpaA Location: 5735602-5735740 bp Feature: domain Description: SpaA Location: 5735884-5736058 bp Feature: domain Description: SpaA Location: 5735884-5736058 bp Feature: gene Location: 5736840-5738084 bp Feature: gene Location: 5738351-5739415 bp Ori: AWK11646.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5738507-5739119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5738507-57391 1 9 bp Feature: gene Location: 5739650-5740423 bp Ori: AWK11647.1 Feature: domain Description: DnaC Location: 5739656-5740388 bp Feature: domain Description: DnaC Location: 5739656-5740388 bp Feature: gene Location: 5740423-5742018 bp Ori: AWK11648.1 Feature: domain Description: COG4584 Location: 5740465-5740615 bp Feature: domain Description: COG4584 Location: 5740465-574061 5 bp Feature: domain Description: COG4584 Location: 5740663-5741317 bp Feature: domain Description: COG4584 Location: 5740663-5741 31 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1_4 (pfam13701), HTH_Tnp_ISL3 (pfam13542), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), COG3547 (Transposase ), COG5421 (Transposase )
SpaA (pfam17802), RVT-Retrons, DnaC (COG1484), COG4584 (Transposase )