myRT

myRT report for GCA_003129525.1_ASM312952v1

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Seq: CP029329.1 Clostridium beijerinckii isolate WB53 chromosome, complete genome (4258077 bp)
Overview 1 RT 1: 1821843-1828576 bp 2 RT 2: 1957488-1963948 bp 3 RT 3: 2005578-2011397 bp 4 RT 4: 3303774-3307946 bp 5 RT 5: 3679708-3688638 bp 6 RT 6: 4215868-4219888 bp Neighborhood of RT #1 [1821843, 1828576] COG3177 P-type_ATPase_Ca_prok P-type_ATPase_SERCA RVT-GII group_II_RT_mat Neighborhood of RT #2 [1957488, 1963948] KOG1123 SSL2 RVT-UG14 Neighborhood of RT #3 [2005578, 2011546] PRK00409 YbbK RVT-GII group_II_RT_mat Acetyltransf_1 Neighborhood of RT #4 [3303774, 3307960] RVT-GII HNHc DUF1659 DUF2922 Neighborhood of RT #5 [3679708, 3688638] RVT-GII HNHc DEXDc Helicase_C_2 Neighborhood of RT #6 [4215868, 4220214] PRK06921 RVT-GII HNHc PRK06921 DnaD Feature: gene Location: 1821843-1822604 bp Ori: AWK50965.1 Feature: domain Description: COG3177 Location: 1821897-1822581 bp Feature: domain Description: COG31 77 Location: 1 821 897-1 822581 bp Feature: gene Location: 1822915-1825515 bp Ori: AWK50966.1 Feature: domain Description: P-type_ATPase_Ca_prok Location: 1822945-1825102 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1 822945-1 8251 02 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1825210-1825489 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1 82521 0-1 825489 bp Feature: gene Location: 1826235-1827149 bp Ori: AWK50967.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1826490-1827114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 826490-1 8271 1 4 bp Feature: gene Location: 1827234-1827578 bp Ori: AWK50968.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1827240-1827456 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 827240-1 827456 bp Feature: gene Location: 1828148-1828576 bp Feature: gene Location: 1957488-1959101 bp Ori: AWK51081.1 Feature: domain Description: KOG1123 Location: 1957497-1957872 bp Feature: domain Description: KOG1 1 23 Location: 1 957497-1 957872 bp Feature: domain Description: SSL2 Location: 1957971-1958589 bp Feature: domain Description: SSL2 Location: 1 957971 -1 958589 bp Feature: gene Location: 1959070-1960104 bp Feature: gene Location: 1960400-1961968 bp Ori: AWK51083.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1960754-1961102 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 960754-1 961 1 02 bp Feature: gene Location: 1962190-1962909 bp Feature: gene Location: 1963034-1963948 bp Feature: gene Location: 2005578-2007938 bp Ori: AWK51116.1 Feature: domain Description: PRK00409 Location: 2005581-2007933 bp Feature: domain Description: PRK00409 Location: 2005581 -2007933 bp Feature: gene Location: 2008141-2008866 bp Ori: AWK51117.1 Feature: domain Description: YbbK Location: 2008150-2008588 bp Feature: domain Description: YbbK Location: 20081 50-2008588 bp Feature: gene Location: 2009491-2010405 bp Ori: AWK51118.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009746-2010370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009746-201 0370 bp Feature: gene Location: 2010490-2010834 bp Ori: AWK51119.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2010496-2010712 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 201 0496-201 071 2 bp Feature: gene Location: 2011019-2011546 bp Ori: AWK51120.1 Feature: domain Description: Acetyltransf_1 Location: 2011073-2011397 bp Feature: domain Description: Acetyltransf_1 Location: 201 1 073-201 1 397 bp Feature: gene Location: 3303774-3303956 bp Feature: gene Location: 3304186-3304674 bp Feature: gene Location: 3305699-3307453 bp Ori: AWK53100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305957-3306656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305957-3306656 bp Feature: domain Description: HNHc Note: nucleases Location: 3307208-3307343 bp Feature: domain Description: HNHc Note: nucleases Location: 3307208-3307343 bp Feature: gene Location: 3307532-3307711 bp Ori: AWK53101.1 Feature: domain Description: DUF1659 Location: 3307568-3307640 bp Feature: domain Description: DUF1 659 Location: 3307568-3307640 bp Feature: gene Location: 3307742-3307960 bp Ori: AWK52163.1 Feature: domain Description: DUF2922 Location: 3307757-3307946 bp Feature: domain Description: DUF2922 Location: 3307757-3307946 bp Feature: gene Location: 3679708-3680094 bp Feature: gene Location: 3680138-3680218 bp Feature: gene Location: 3680238-3681992 bp Ori: AWK53115.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680496-3681195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680496-3681 1 95 bp Feature: domain Description: HNHc Note: nucleases Location: 3681765-3681882 bp Feature: domain Description: HNHc Note: nucleases Location: 3681 765-3681 882 bp Feature: gene Location: 3683919-3686528 bp Ori: AWK52513.1 Feature: domain Description: DEXDc Location: 3684027-3684804 bp Feature: domain Description: DEXDc Location: 3684027-3684804 bp Feature: domain Description: Helicase_C_2 Location: 3684975-3685344 bp Feature: domain Description: Helicase_C_2 Location: 3684975-3685344 bp Feature: gene Location: 3688108-3688638 bp Feature: gene Location: 4215868-4216035 bp Feature: domain Description: PRK06921 Location: 4215874-4216030 bp Feature: domain Description: PRK06921 Location: 421 5874-421 6030 bp Feature: gene Location: 4216042-4216128 bp Feature: gene Location: 4216146-4217897 bp Ori: AWK53138.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4216404-4217100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 6404-421 71 00 bp Feature: domain Description: HNHc Note: nucleases Location: 4217652-4217787 bp Feature: domain Description: HNHc Note: nucleases Location: 421 7652-421 7787 bp Feature: gene Location: 4218648-4219199 bp Ori: AWK53139.1 Feature: domain Description: PRK06921 Location: 4218660-4219158 bp Feature: domain Description: PRK06921 Location: 421 8660-421 91 58 bp Feature: gene Location: 4219441-4220214 bp Feature: domain Description: DnaD Location: 4219540-4219888 bp Feature: domain Description: DnaD Location: 421 9540-421 9888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), RVT-GII, group_II_RT_mat (TIGR04416), KOG1123 (KOG1123, RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 ), SSL2 (COG1061), RVT-UG14, PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed), YbbK (COG1683)
Acetyltransf_1 (pfam00583), HNHc (smart00507), DUF1659 (pfam07872), DUF2922 (pfam11148), DEXDc (smart00487), Helicase_C_2 (pfam13307), PRK06921 (hypothetical protein; Provisional), DnaD (COG3935)