myRT

myRT report for GCA_003130705.1_ASM313070v1

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Seq: CP021354.1 Rhodococcus sp. S2-17 chromosome, complete genome (6611769 bp)
Overview 1 RT 1: 495959-499659 bp Neighborhood of RT #1 [495959, 499685] COG3804 TetR_C_6 RVT-Retrons PLDc_N SRPBCC_7 Feature: gene Location: 495959-497047 bp Ori: AWK70592.1 Feature: domain Description: COG3804 Location: 495983-497018 bp Feature: domain Description: COG3804 Location: 495983-49701 8 bp Feature: gene Location: 497103-497279 bp Ori: AWK70593.1 Feature: domain Description: TetR_C_6 Location: 497109-497274 bp Feature: domain Description: TetR_C_6 Location: 4971 09-497274 bp Feature: gene Location: 497540-498781 bp Ori: AWK70594.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 497954-498548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 497954-498548 bp Feature: gene Location: 498867-499151 bp Ori: AWK70595.1 Feature: domain Description: PLDc_N Location: 498897-499032 bp Feature: domain Description: PLDc_N Location: 498897-499032 bp Feature: gene Location: 499176-499685 bp Ori: AWK70596.1 Feature: domain Description: SRPBCC_7 Location: 499221-499659 bp Feature: domain Description: SRPBCC_7 Location: 499221 -499659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3804 (Uncharacterized protein ), TetR_C_6 (pfam13977), RVT-Retrons, PLDc_N (pfam13396), SRPBCC_7 (cd07825)

Seq: CP021355.1 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence (984201 bp)
Overview 1 RT 1: 235720-241148 bp 2 RT 2: 507518-511331 bp 3 RT 3: 516196-520656 bp Neighborhood of RT #1 [235720, 241357] DDE_Tnp_1_4 RVT-GII COG3547 Neighborhood of RT #2 [507518, 511348] PorA INT_RitC_C_like RVT-GII GIIM PRK07855 Neighborhood of RT #3 [516196, 520656] GDH RVT-GII Intron_maturas2 RutF Feature: gene Location: 235720-236091 bp Feature: gene Location: 236320-237714 bp Ori: AWK76119.1 Feature: domain Description: DDE_Tnp_1_4 Location: 236362-237670 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2 36362 -2 37670 bp Feature: gene Location: 237957-239218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238173-238605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 38173-2 38605 bp Feature: gene Location: 239923-240153 bp Feature: gene Location: 240275-241357 bp Ori: AWK76653.1 Feature: domain Description: COG3547 Location: 240299-241148 bp Feature: domain Description: COG3547 Location: 2 402 99-2 41148 bp Feature: gene Location: 507518-508594 bp Ori: AWK76303.1 Feature: domain Description: PorA Location: 507542-508535 bp Feature: domain Description: PorA Location: 507542 -508535 bp Feature: gene Location: 508633-509121 bp Ori: AWK76304.1 Feature: domain Description: INT_RitC_C_like Location: 508765-509047 bp Feature: domain Description: INT_RitC_C_like Location: 508765-509047 bp Feature: gene Location: 509190-509829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509226-509382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5092 2 6-509382 bp Feature: domain Description: GIIM Note: maturase Location: 509457-509673 bp Feature: domain Description: GIIM Note: maturase Location: 509457-509673 bp Feature: gene Location: 509981-510948 bp Feature: gene Location: 511013-511348 bp Feature: domain Description: PRK07855 Location: 511019-511331 bp Feature: domain Description: PRK07855 Location: 511019-511331 bp Feature: gene Location: 516196-516938 bp Feature: domain Description: GDH Location: 516211-516625 bp Feature: domain Description: GDH Location: 5162 11-51662 5 bp Feature: gene Location: 517150-517296 bp Feature: gene Location: 517848-519531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518013-518808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518013-518808 bp Feature: domain Description: Intron_maturas2 Location: 518922-519138 bp Feature: domain Description: Intron_maturas2 Location: 51892 2 -519138 bp Feature: gene Location: 519720-520205 bp Ori: AWK76309.1 Feature: domain Description: RutF Location: 519744-520197 bp Feature: domain Description: RutF Location: 519744-52 0197 bp Feature: gene Location: 520240-520656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, COG3547 (Transposase ), PorA (COG0674), INT_RitC_C_like (cd01182), GIIM (pfam08388), PRK07855 (lipid-transfer protein; Provisional), GDH (cd05301), Intron_maturas2 (pfam01348), RutF (TIGR03615)