myRT

myRT report for GCA_003143915.1_ASM314391v1

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Seq: CP029349.1 Lactobacillus plantarum strain HAC01 chromosome, complete genome (3197727 bp)
Overview 1 RT 1: 2213142-2217603 bp Neighborhood of RT #1 [2213142, 2217611] Phage_int_SAM_5 INT_ICEBs1_C_like RVT-Retrons gpmA Feature: gene Location: 2213142-2214272 bp Ori: AWL16552.1 Feature: domain Description: Phage_int_SAM_5 Location: 2213331-2213589 bp Feature: domain Description: Phage_int_SAM_5 Location: 221 3331 -221 3589 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2213709-2214210 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 221 3709-221 421 0 bp Feature: gene Location: 2214822-2215169 bp Feature: gene Location: 2215106-2216050 bp Ori: AWL16554.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2215235-2215781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 221 5235-221 5781 bp Feature: gene Location: 2216156-2217106 bp Feature: gene Location: 2217399-2217611 bp Gene: gpmA Feature: domain Description: gpmA Location: 2217402-2217603 bp Feature: domain Description: gpmA Location: 221 7402-221 7603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189), RVT-Retrons, gpmA (PRK14120)

Seq: CP029350.1 Lactobacillus plantarum strain HAC01 plasmid pLP-HAC01, complete sequence (32870 bp)
Overview 1 RT 1: 18228-21815 bp Neighborhood of RT #1 [18228, 21815] 2a45 DDE_Tnp_Tn3 RVT-GII GIIM PRK09564 Feature: gene Location: 18228-18335 bp Feature: domain Description: 2a45 Location: 18231-18327 bp Feature: domain Description: 2 a45 Location: 182 31-1832 7 bp Feature: gene Location: 18391-18732 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 18397-18664 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 18397-18664 bp Feature: gene Location: 18896-19798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18911-19352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18911-19352 bp Feature: domain Description: GIIM Note: maturase Location: 19406-19634 bp Feature: domain Description: GIIM Note: maturase Location: 19406-19634 bp Feature: gene Location: 19933-21297 bp Ori: AWL17541.1 Feature: domain Description: PRK09564 Location: 19948-21271 bp Feature: domain Description: PRK09564 Location: 19948-2 12 71 bp Feature: gene Location: 21429-21815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2a45 (TIGR00935), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PRK09564 (coenzyme A disulfide reductase; Reviewed)