myRT

myRT report for GCA_003149495.1_ASM314949v1

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Seq: CP025958.1 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome (8998893 bp)
Overview 1 RT 1: 481838-487398 bp 2 RT 2: 1272414-1286647 bp 3 RT 3: 2078718-2082172 bp 4 RT 4: 2941966-2948817 bp 5 RT 5: 3007793-3015045 bp 6 RT 6: 3351137-3359524 bp 7 RT 7: 4681419-4688297 bp 8 RT 8: 6316406-6322537 bp Neighborhood of RT #1 [481838, 487439] PRK09279 RVT-GII CsrA Neighborhood of RT #2 [1272414, 1286715] HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind Nnr1 RVT-Retrons SWIM WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #3 [2078718, 2082172] InsE RVT-GII DUF2171 Neighborhood of RT #4 [2941966, 2948876] PQQ_3 PQQ_2 PQQ_3 FGE-sulfatase RVT-Retrons HEAT_2 Aldo_ket_red Planc_Planc_Planc_TIGR03067 Neighborhood of RT #5 [3007793, 3015059] SBP_bac_10 WcaJ_sugtrans RVT-Retrons PGM_like4 SIRT5_Af1_CobB Neighborhood of RT #6 [3351137, 3359589] murB HEAT_2 RVT-GII GIIM RpoE WD40 WD40 WD40 N_methyl SBP_bac_10 SBP_bac_10 Neighborhood of RT #7 [4681419, 4688297] PQQ_2 PAS_like RVT-Retrons Neighborhood of RT #8 [6316406, 6322537] RVT-GII GIIM XerC Feature: gene Location: 481838-482245 bp Feature: gene Location: 482380-485049 bp Ori: AWM35941.1 Feature: domain Description: PRK09279 Location: 482386-485035 bp Feature: domain Description: PRK09279 Location: 482386-485035 bp Feature: gene Location: 485162-486207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485165-485699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4851 65-485699 bp Feature: gene Location: 486775-487050 bp Feature: gene Location: 487242-487439 bp Ori: AWM35942.1 Feature: domain Description: CsrA Location: 487245-487398 bp Feature: domain Description: CsrA Location: 487245-487398 bp Feature: gene Location: 1272414-1274543 bp Ori: AWM36470.1 Feature: domain Description: HemolysinCabind Location: 1272762-1272864 bp Feature: domain Description: HemolysinCabind Location: 1 272762-1 272864 bp Feature: domain Description: HemolysinCabind Location: 1272930-1273023 bp Feature: domain Description: HemolysinCabind Location: 1 272930-1 273023 bp Feature: domain Description: HemolysinCabind Location: 1273038-1273083 bp Feature: domain Description: HemolysinCabind Location: 1 273038-1 273083 bp Feature: domain Description: HemolysinCabind Location: 1273275-1273380 bp Feature: domain Description: HemolysinCabind Location: 1 273275-1 273380 bp Feature: domain Description: HemolysinCabind Location: 1273437-1273539 bp Feature: domain Description: HemolysinCabind Location: 1 273437-1 273539 bp Feature: domain Description: HemolysinCabind Location: 1273698-1273755 bp Feature: domain Description: HemolysinCabind Location: 1 273698-1 273755 bp Feature: domain Description: HemolysinCabind Location: 1273779-1273884 bp Feature: domain Description: HemolysinCabind Location: 1 273779-1 273884 bp Feature: domain Description: HemolysinCabind Location: 1274034-1274127 bp Feature: domain Description: HemolysinCabind Location: 1 274034-1 2741 27 bp Feature: domain Description: HemolysinCabind Location: 1274190-1274295 bp Feature: domain Description: HemolysinCabind Location: 1 2741 90-1 274295 bp Feature: domain Description: HemolysinCabind Location: 1274361-1274424 bp Feature: domain Description: HemolysinCabind Location: 1 274361 -1 274424 bp Feature: gene Location: 1275461-1276123 bp Ori: AWM36471.1 Feature: domain Description: Nnr1 Location: 1275473-1276058 bp Feature: domain Description: Nnr1 Location: 1 275473-1 276058 bp Feature: gene Location: 1276228-1277565 bp Ori: AWM36472.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1276702-1277323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 276702-1 277323 bp Feature: gene Location: 1277761-1279620 bp Ori: AWM36473.1 Feature: domain Description: SWIM Location: 1279225-1279345 bp Feature: domain Description: SWIM Location: 1 279225-1 279345 bp Feature: gene Location: 1279774-1286715 bp Ori: AWM36474.1 Feature: domain Description: WD40 Location: 1280545-1280827 bp Feature: domain Description: WD40 Location: 1 280545-1 280827 bp Feature: domain Description: WD40 Location: 1280884-1281175 bp Feature: domain Description: WD40 Location: 1 280884-1 281 1 75 bp Feature: domain Description: HEAT_2 Location: 1281262-1281439 bp Feature: domain Description: HEAT_2 Location: 1 281 262-1 281 439 bp Feature: domain Description: HEAT_2 Location: 1282021-1282231 bp Feature: domain Description: HEAT_2 Location: 1 282021 -1 282231 bp Feature: domain Description: HEAT_2 Location: 1282498-1282630 bp Feature: domain Description: HEAT_2 Location: 1 282498-1 282630 bp Feature: domain Description: HEAT_2 Location: 1282654-1282813 bp Feature: domain Description: HEAT_2 Location: 1 282654-1 28281 3 bp Feature: domain Description: HEAT_2 Location: 1282828-1282951 bp Feature: domain Description: HEAT_2 Location: 1 282828-1 282951 bp Feature: domain Description: HEAT_2 Location: 1282999-1283206 bp Feature: domain Description: HEAT_2 Location: 1 282999-1 283206 bp Feature: domain Description: HEAT_2 Location: 1283878-1284037 bp Feature: domain Description: HEAT_2 Location: 1 283878-1 284037 bp Feature: domain Description: HEAT_2 Location: 1284328-1284550 bp Feature: domain Description: HEAT_2 Location: 1 284328-1 284550 bp Feature: domain Description: HEAT_2 Location: 1284979-1285231 bp Feature: domain Description: HEAT_2 Location: 1 284979-1 285231 bp Feature: domain Description: HEAT_2 Location: 1286131-1286338 bp Feature: domain Description: HEAT_2 Location: 1 2861 31 -1 286338 bp Feature: domain Description: HEAT_2 Location: 1286461-1286647 bp Feature: domain Description: HEAT_2 Location: 1 286461 -1 286647 bp Feature: gene Location: 2078718-2079576 bp Feature: gene Location: 2079907-2080137 bp Ori: AWM37038.1 Feature: domain Description: InsE Location: 2079919-2080102 bp Feature: domain Description: InsE Location: 207991 9-20801 02 bp Feature: gene Location: 2080169-2080942 bp Ori: AWM37039.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080532-2080922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080532-2080922 bp Feature: gene Location: 2081458-2081841 bp Ori: AWM37040.1 Feature: domain Description: DUF2171 Location: 2081617-2081797 bp Feature: domain Description: DUF21 71 Location: 2081 61 7-2081 797 bp Feature: gene Location: 2081981-2082172 bp Feature: gene Location: 2941966-2943294 bp Ori: AWM37688.1 Feature: domain Description: PQQ_3 Location: 2942137-2942209 bp Feature: domain Description: PQQ_3 Location: 29421 37-2942209 bp Feature: domain Description: PQQ_2 Location: 2942311-2943052 bp Feature: domain Description: PQQ_2 Location: 294231 1 -2943052 bp Feature: domain Description: PQQ_3 Location: 2943097-2943157 bp Feature: domain Description: PQQ_3 Location: 2943097-29431 57 bp Feature: gene Location: 2943325-2944305 bp Ori: AWM37689.1 Feature: domain Description: FGE-sulfatase Location: 2943586-2944267 bp Feature: domain Description: FGE-sulfatase Location: 2943586-2944267 bp Feature: gene Location: 2944302-2945852 bp Ori: AWM37690.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2944929-2945553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2944929-2945553 bp Feature: gene Location: 2946440-2947981 bp Ori: AWM37691.1 Feature: domain Description: HEAT_2 Location: 2946560-2946758 bp Feature: domain Description: HEAT_2 Location: 2946560-2946758 bp Feature: domain Description: Aldo_ket_red Location: 2947385-2947916 bp Feature: domain Description: Aldo_ket_red Location: 2947385-294791 6 bp Feature: gene Location: 2948403-2948876 bp Ori: AWM37692.1 Feature: domain Description: Planc_Planc_Planc_TIGR03067 Location: 2948502-2948817 bp Feature: domain Description: Planc_Planc_Planc_TIGR03067 Location: 2948502-294881 7 bp Feature: gene Location: 3007793-3009391 bp Ori: AWM37743.1 Feature: domain Description: SBP_bac_10 Location: 3008783-3009194 bp Feature: domain Description: SBP_bac_1 0 Location: 3008783-30091 94 bp Feature: gene Location: 3009513-3010913 bp Ori: AWM37744.1 Feature: domain Description: WcaJ_sugtrans Location: 3009558-3010911 bp Feature: domain Description: WcaJ_sugtrans Location: 3009558-301 091 1 bp Feature: gene Location: 3011467-3012825 bp Ori: AWM37745.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3011926-3012556 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 301 1 926-301 2556 bp Feature: gene Location: 3012886-3014235 bp Ori: AWM37746.1 Gene: glmM Feature: domain Description: PGM_like4 Location: 3012910-3014212 bp Feature: domain Description: PGM_like4 Location: 301 291 0-301 421 2 bp Feature: gene Location: 3014310-3015059 bp Ori: AWM37747.1 Feature: domain Description: SIRT5_Af1_CobB Location: 3014376-3015045 bp Feature: domain Description: SIRT5_Af1 _CobB Location: 301 4376-301 5045 bp Feature: gene Location: 3351137-3352015 bp Ori: AWM37968.1 Gene: murB Feature: domain Description: murB Location: 3351170-3352010 bp Feature: domain Description: murB Location: 3351 1 70-335201 0 bp Feature: gene Location: 3352115-3352933 bp Ori: AWM37969.1 Feature: domain Description: HEAT_2 Location: 3352508-3352790 bp Feature: domain Description: HEAT_2 Location: 3352508-3352790 bp Feature: gene Location: 3353446-3354864 bp Ori: AWM37970.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353809-3354424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353809-3354424 bp Feature: domain Description: GIIM Note: maturase Location: 3354472-3354676 bp Feature: domain Description: GIIM Note: maturase Location: 3354472-3354676 bp Feature: gene Location: 3355139-3358519 bp Ori: AWM37971.1 Feature: domain Description: RpoE Location: 3355244-3355730 bp Feature: domain Description: RpoE Location: 3355244-3355730 bp Feature: domain Description: WD40 Location: 3356153-3356840 bp Feature: domain Description: WD40 Location: 33561 53-3356840 bp Feature: domain Description: WD40 Location: 3356966-3357311 bp Feature: domain Description: WD40 Location: 3356966-335731 1 bp Feature: domain Description: WD40 Location: 3357674-3357986 bp Feature: domain Description: WD40 Location: 3357674-3357986 bp Feature: gene Location: 3358624-3359589 bp Ori: AWM42239.1 Feature: domain Description: N_methyl Location: 3358654-3358717 bp Feature: domain Description: N_methyl Location: 3358654-335871 7 bp Feature: domain Description: SBP_bac_10 Location: 3358732-3358933 bp Feature: domain Description: SBP_bac_1 0 Location: 3358732-3358933 bp Feature: domain Description: SBP_bac_10 Location: 3359068-3359524 bp Feature: domain Description: SBP_bac_1 0 Location: 3359068-3359524 bp Feature: gene Location: 4681419-4682366 bp Ori: AWM38939.1 Feature: domain Description: PQQ_2 Location: 4681521-4682292 bp Feature: domain Description: PQQ_2 Location: 4681 521 -4682292 bp Feature: gene Location: 4682386-4684086 bp Ori: AWM38940.1 Feature: domain Description: PAS_like Location: 4682446-4683973 bp Feature: domain Description: PAS_like Location: 4682446-4683973 bp Feature: gene Location: 4684234-4685844 bp Ori: AWM38941.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4685002-4685617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4685002-468561 7 bp Feature: gene Location: 4686102-4686566 bp Feature: gene Location: 4686669-4688297 bp Feature: gene Location: 6316406-6317425 bp Feature: gene Location: 6317882-6318268 bp Feature: gene Location: 6318453-6319871 bp Ori: AWM40125.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6318816-6319431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631 881 6-631 9431 bp Feature: domain Description: GIIM Note: maturase Location: 6319479-6319683 bp Feature: domain Description: GIIM Note: maturase Location: 631 9479-631 9683 bp Feature: gene Location: 6320630-6321706 bp Ori: AWM40126.1 Feature: domain Description: XerC Location: 6320813-6321569 bp Feature: domain Description: XerC Location: 632081 3-6321 569 bp Feature: gene Location: 6322022-6322537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09279 (pyruvate phosphate dikinase; Provisional), RVT-GII, CsrA (pfam02599), HemolysinCabind (pfam00353), Nnr1 (COG0062), RVT-Retrons, SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646), InsE (COG2963)
DUF2171 (pfam09939), PQQ_3 (pfam13570), PQQ_2 (pfam13360), FGE-sulfatase (pfam03781), Aldo_ket_red (pfam00248), Planc_Planc_Planc_TIGR03067, SBP_bac_10 (pfam07596), WcaJ_sugtrans (TIGR03023), PGM_like4 (cd05803), SIRT5_Af1_CobB (cd01412)
murB (TIGR00179), GIIM (pfam08388), RpoE (COG3343), N_methyl (pfam07963), PAS_like (cd16025), XerC (COG4973)