myRT

myRT report for GCA_003177055.1_ASM317705v1

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Seq: CP029453.1 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence (401505 bp)
Overview 1 RT 1: 44202-51500 bp 2 RT 2: 149725-154591 bp Neighborhood of RT #1 [44202, 51625] Rve COG4644 RVT-GII RVT-GII RVT-GII HTH_21 HTH_Tnp_1 Neighborhood of RT #2 [149725, 154591] fkbM_fam Y2_Tnp RVT-GII Rve Feature: gene Location: 44202-44918 bp Ori: AWM29701.1 Feature: domain Description: Rve Location: 44238-44868 bp Feature: domain Description: Rve Location: 44238-44868 bp Feature: gene Location: 46710-47039 bp Ori: AWM29702.1 Feature: domain Description: COG4644 Location: 46725-47034 bp Feature: domain Description: COG4644 Location: 46725-47034 bp Feature: gene Location: 47406-48011 bp Ori: AWM29703.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47817-47874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4781 7-47874 bp Feature: gene Location: 47891-48661 bp Ori: AWM29704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47897-48506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47897-48506 bp Feature: gene Location: 49607-50779 bp Ori: AWM29705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49709-50399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49709-50399 bp Feature: gene Location: 50970-51275 bp Ori: AWM29706.1 Feature: domain Description: HTH_21 Location: 51021-51156 bp Feature: domain Description: HTH_21 Location: 51 021 -51 1 56 bp Feature: gene Location: 51275-51625 bp Ori: AWM29707.1 Feature: domain Description: HTH_Tnp_1 Location: 51278-51500 bp Feature: domain Description: HTH_Tnp_1 Location: 51 278-51 500 bp Feature: gene Location: 149725-150450 bp Ori: AWM29818.1 Feature: domain Description: fkbM_fam Location: 149872-150319 bp Feature: domain Description: fkbM_fam Location: 1 49872-1 5031 9 bp Feature: gene Location: 151588-152013 bp Ori: AWM29819.1 Feature: domain Description: Y2_Tnp Location: 151726-151819 bp Feature: domain Description: Y2_Tnp Location: 1 51 726-1 51 81 9 bp Feature: gene Location: 152089-152970 bp Ori: AWM29820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152113-152608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 1 3-1 52608 bp Feature: gene Location: 152931-153764 bp Ori: AWM29821.1 Feature: domain Description: Rve Location: 152967-153534 bp Feature: domain Description: Rve Location: 1 52967-1 53534 bp Feature: gene Location: 154358-154591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), COG4644 (Transposase and inactivated derivatives, TnpA family ), RVT-GII, HTH_21 (pfam13276), HTH_Tnp_1 (pfam01527), fkbM_fam (TIGR01444), Y2_Tnp (pfam04986)

Seq: CP029451.1 Sinorhizobium fredii CCBAU 25509 chromosome, complete genome (4198614 bp)
Overview 1 RT 1: 3185436-3192095 bp Neighborhood of RT #1 [3185436, 3192095] REC XerC RVT-CRISPR-like RVT-CRISPR-like Feature: gene Location: 3185436-3185792 bp Ori: AWM26469.1 Feature: domain Description: REC Location: 3185448-3185784 bp Feature: domain Description: REC Location: 3185448-3185784 bp Feature: gene Location: 3186399-3187595 bp Ori: AWM26470.1 Feature: domain Description: XerC Location: 3186654-3187494 bp Feature: domain Description: XerC Location: 3186654-3187494 bp Feature: gene Location: 3188046-3189320 bp Ori: AWM26471.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3188409-3188535 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3188409-3188535 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3188682-3188871 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3188682 -3188871 bp Feature: gene Location: 3189820-3190032 bp Feature: gene Location: 3191982-3192095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), XerC (COG4973), RVT-CRISPR