myRT

myRT report for GCA_003180975.1_ASM318097v1

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Seq: CP029575.1 Escherichia coli strain DA33133 plasmid pDA33133-157, complete sequence (156518 bp)
Overview 1 RT 1: 49104-52972 bp Neighborhood of RT #1 [49104, 52972] RVT-GII Intron_maturas2 HNHc Rve Feature: gene Location: 49104-49310 bp Feature: gene Location: 49297-49374 bp Feature: gene Location: 49988-51889 bp Ori: AWO23215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50255-51086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50255-51 086 bp Feature: domain Description: Intron_maturas2 Location: 51200-51458 bp Feature: domain Description: Intron_maturas2 Location: 51 200-51 458 bp Feature: domain Description: HNHc Note: nucleases Location: 51632-51794 bp Feature: domain Description: HNHc Note: nucleases Location: 51 632-51 794 bp Feature: gene Location: 52035-52739 bp Ori: AWO23216.1 Feature: domain Description: Rve Location: 52038-52683 bp Feature: domain Description: Rve Location: 52038-52683 bp Feature: gene Location: 52685-52972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Rve (COG3316)

Seq: CP029574.1 Escherichia coli strain DA33133 chromosome, complete genome (4771844 bp)
Overview 1 RT 1: 2015267-2018534 bp 2 RT 2: 3716964-3720666 bp Neighborhood of RT #1 [2015267, 2018934] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [3716964, 3720776] InsE RVT-GII GIIM PHA02517 Ogr_Delta Feature: gene Location: 2015267-2015485 bp Feature: gene Location: 2015451-2015924 bp Feature: domain Description: PHA02517 Location: 2015457-2015922 bp Feature: domain Description: PHA02 517 Location: 2 015457-2 01592 2 bp Feature: gene Location: 2016014-2017537 bp Ori: AWO20498.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016287-2017019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0162 87-2 017019 bp Feature: domain Description: GIIM Note: maturase Location: 2017094-2017292 bp Feature: domain Description: GIIM Note: maturase Location: 2 017094-2 0172 92 bp Feature: gene Location: 2017831-2018202 bp Feature: gene Location: 2018195-2018934 bp Feature: domain Description: InsE Location: 2018198-2018534 bp Feature: domain Description: InsE Location: 2 018198-2 018534 bp Feature: gene Location: 3716964-3717652 bp Feature: domain Description: InsE Location: 3716973-3717258 bp Feature: domain Description: InsE Location: 3716973-37172 58 bp Feature: gene Location: 3717579-3718016 bp Feature: gene Location: 3718310-3719833 bp Ori: AWO22070.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3718583-3719315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3718583-3719315 bp Feature: domain Description: GIIM Note: maturase Location: 3719390-3719588 bp Feature: domain Description: GIIM Note: maturase Location: 3719390-3719588 bp Feature: gene Location: 3719914-3720402 bp Feature: domain Description: PHA02517 Location: 3719917-3720391 bp Feature: domain Description: PHA02 517 Location: 3719917-372 0391 bp Feature: gene Location: 3720516-3720776 bp Ori: AWO22071.1 Feature: domain Description: Ogr_Delta Location: 3720525-3720666 bp Feature: domain Description: Ogr_Delta Location: 372 052 5-372 0666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Ogr_Delta (pfam04606)