myRT

myRT report for GCA_003180995.1_ASM318099v1

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Seq: CP029580.1 Escherichia coli strain DA33137 plasmid pDA33137-178, complete sequence (178078 bp)
Overview 1 RT 1: 55952-59378 bp 2 RT 2: 70115-73181 bp Neighborhood of RT #1 [55952, 59778] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [70115, 73405] InsE RVT-GII PRK10173 Sigma70_r4_2 Sigma70_r4_2 Feature: gene Location: 55952-56356 bp Ori: AWO33566.1 Feature: domain Description: InsE Location: 55982-56318 bp Feature: domain Description: InsE Location: 55982-5631 8 bp Feature: gene Location: 56385-56768 bp Feature: domain Description: PHA02517 Location: 56391-56724 bp Feature: domain Description: PHA0251 7 Location: 56391 -56724 bp Feature: gene Location: 56858-58381 bp Ori: AWO33567.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57131-57863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571 31 -57863 bp Feature: domain Description: GIIM Note: maturase Location: 57938-58136 bp Feature: domain Description: GIIM Note: maturase Location: 57938-581 36 bp Feature: gene Location: 58675-59046 bp Feature: gene Location: 59039-59778 bp Feature: domain Description: InsE Location: 59042-59378 bp Feature: domain Description: InsE Location: 59042-59378 bp Feature: gene Location: 70115-70854 bp Feature: domain Description: InsE Location: 70118-70454 bp Feature: domain Description: InsE Location: 701 1 8-70454 bp Feature: gene Location: 70847-71218 bp Feature: gene Location: 71512-72015 bp Ori: AWO33583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71785-71854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 785-71 854 bp Feature: gene Location: 72054-72798 bp Feature: domain Description: PRK10173 Location: 72057-72495 bp Feature: domain Description: PRK1 01 73 Location: 72057-72495 bp Feature: gene Location: 72920-73405 bp Ori: AWO33584.1 Feature: domain Description: Sigma70_r4_2 Location: 72980-73052 bp Feature: domain Description: Sigma70_r4_2 Location: 72980-73052 bp Feature: domain Description: Sigma70_r4_2 Location: 73121-73181 bp Feature: domain Description: Sigma70_r4_2 Location: 731 21 -731 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), Sigma70_r4_2 (pfam08281)

Seq: CP029579.1 Escherichia coli strain DA33137 chromosome, complete genome (5261695 bp)
Overview 1 RT 1: 714958-719544 bp 2 RT 2: 1489424-1495455 bp Neighborhood of RT #1 [714958, 719544] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #2 [1489424, 1495455] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 714958-715992 bp Ori: AWO29162.1 Feature: domain Description: Q Location: 714961-715984 bp Feature: domain Description: Q Location: 714961-715984 bp Feature: gene Location: 716505-717869 bp Ori: AWO29163.1 Feature: domain Description: FRG Location: 717072-717357 bp Feature: domain Description: FRG Location: 717072 -717357 bp Feature: gene Location: 717978-718928 bp Ori: AWO29164.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 718158-718701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 718158-718701 bp Feature: gene Location: 718894-719214 bp Ori: AWO29165.1 Feature: domain Description: HTH_XRE Location: 718909-719068 bp Feature: domain Description: HTH_XRE Location: 718909-719068 bp Feature: gene Location: 719251-719544 bp Feature: gene Location: 1489424-1490344 bp Ori: AWO29829.1 Feature: domain Description: AbiEii Location: 1489466-1490207 bp Feature: domain Description: AbiEii Location: 1489466-14902 07 bp Feature: gene Location: 1490331-1491134 bp Ori: AWO29830.1 Feature: domain Description: AbiEi_3_N Location: 1490364-1490625 bp Feature: domain Description: AbiEi_3_N Location: 1490364-149062 5 bp Feature: domain Description: AbiEi_3 Location: 1490637-1491093 bp Feature: domain Description: AbiEi_3 Location: 1490637-1491093 bp Feature: gene Location: 1491429-1494638 bp Ori: AWO29831.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1491957-1492446 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1491957-1492 446 bp Feature: domain Description: nitrilase Location: 1493952-1494549 bp Feature: domain Description: nitrilase Location: 1493952 -1494549 bp Feature: gene Location: 1494799-1494939 bp Ori: AWO29832.1 Feature: domain Description: Phage_ASH Location: 1494826-1494919 bp Feature: domain Description: Phage_ASH Location: 149482 6-1494919 bp Feature: gene Location: 1494985-1495455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)