myRT

myRT report for GCA_003181035.1_ASM318103v1

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Seq: CP029576.1 Escherichia coli strain DA33135 chromosome, complete genome (5043703 bp)
Overview 1 RT 1: 464456-468448 bp 2 RT 2: 488596-492176 bp 3 RT 3: 1118122-1127629 bp 4 RT 4: 1168086-1170887 bp 5 RT 5: 2405820-2410718 bp Neighborhood of RT #1 [464456, 468450] InsE RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [488596, 492176] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1118122, 1128345] AidA AidA YeeP RVT-UG1 GerD HEPN_Apea Neighborhood of RT #4 [1168086, 1170887] RAYT IS285 RVT-GII HTH_Tnp_1 Neighborhood of RT #5 [2405820, 2410718] RVT-Retrons Feature: gene Location: 464456-465144 bp Feature: domain Description: InsE Location: 464465-464750 bp Feature: domain Description: InsE Location: 464465-464750 bp Feature: gene Location: 465077-465508 bp Feature: gene Location: 465802-467325 bp Ori: AWO23794.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466075-466807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466075-466807 bp Feature: domain Description: GIIM Note: maturase Location: 466882-467080 bp Feature: domain Description: GIIM Note: maturase Location: 466882-467080 bp Feature: gene Location: 467406-467873 bp Feature: domain Description: PHA02517 Location: 467409-467868 bp Feature: domain Description: PHA0251 7 Location: 467409-467868 bp Feature: gene Location: 467908-468450 bp Feature: domain Description: HTH_38 Location: 467917-468031 bp Feature: domain Description: HTH_38 Location: 46791 7-468031 bp Feature: domain Description: Tra8 Location: 468067-468448 bp Feature: domain Description: Tra8 Location: 468067-468448 bp Feature: gene Location: 488596-489335 bp Feature: domain Description: InsE Location: 488599-488938 bp Feature: domain Description: InsE Location: 488599-488938 bp Feature: gene Location: 489328-489699 bp Feature: gene Location: 489993-491516 bp Ori: AWO23813.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490266-490998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490266-490998 bp Feature: domain Description: GIIM Note: maturase Location: 491073-491271 bp Feature: domain Description: GIIM Note: maturase Location: 491 073-491 271 bp Feature: gene Location: 491606-491992 bp Feature: domain Description: PHA02517 Location: 491612-491990 bp Feature: domain Description: PHA0251 7 Location: 491 61 2-491 990 bp Feature: gene Location: 491961-492176 bp Feature: gene Location: 1118122-1120968 bp Ori: AWO24359.1 Feature: domain Description: AidA Location: 1118161-1120123 bp Feature: domain Description: AidA Location: 1 1 1 81 61 -1 1 201 23 bp Feature: domain Description: AidA Location: 1120162-1120573 bp Feature: domain Description: AidA Location: 1 1 201 62-1 1 20573 bp Feature: gene Location: 1121341-1122213 bp Ori: AWO24360.1 Feature: domain Description: YeeP Location: 1121344-1122211 bp Feature: domain Description: YeeP Location: 1 1 21 344-1 1 2221 1 bp Feature: gene Location: 1122817-1126505 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1123429-1123939 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 1 23429-1 1 23939 bp Feature: gene Location: 1126514-1126948 bp Ori: AWO24361.1 Feature: domain Description: GerD Location: 1126592-1126706 bp Feature: domain Description: GerD Location: 1 1 26592-1 1 26706 bp Feature: gene Location: 1127245-1128345 bp Ori: AWO24362.1 Feature: domain Description: HEPN_Apea Location: 1127314-1127629 bp Feature: domain Description: HEPN_Apea Location: 1 1 2731 4-1 1 27629 bp Feature: gene Location: 1168086-1168208 bp Feature: domain Description: RAYT Location: 1168089-1168209 bp Feature: domain Description: RAYT Location: 1 1 68089-1 1 68209 bp Feature: gene Location: 1168216-1168883 bp Feature: domain Description: IS285 Location: 1168246-1168624 bp Feature: domain Description: IS285 Location: 1 1 68246-1 1 68624 bp Feature: gene Location: 1169026-1169488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169038-1169230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 69038-1 1 69230 bp Feature: gene Location: 1169743-1169992 bp Ori: AWO24402.1 Feature: domain Description: HTH_Tnp_1 Location: 1169752-1169965 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 69752-1 1 69965 bp Feature: gene Location: 1169992-1170887 bp Feature: gene Location: 2405820-2406335 bp Feature: gene Location: 2406332-2407459 bp Feature: gene Location: 2407706-2409463 bp Ori: AWO25530.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2407850-2408468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2407850-2408468 bp Feature: gene Location: 2410034-2410273 bp Feature: gene Location: 2410488-2410718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826), AidA (COG3468), YeeP (COG3596), RVT-UG1, GerD (pfam17898)
HEPN_Apea (pfam18739), RAYT (COG1943), IS285 (COG3328), HTH_Tnp_1 (pfam01527), RVT-Retrons

Seq: CP029577.1 Escherichia coli strain DA33135 plasmid pDA33135-139, complete sequence (139191 bp)
Overview 1 RT 1: 65679-68569 bp 2 RT 2: 79306-83094 bp Neighborhood of RT #1 [65679, 68969] Sigma70_r4_2 Sigma70_r4_2 PRK10173 RVT-GII InsE Neighborhood of RT #2 [79306, 83132] InsE RVT-GII GIIM PHA02517 InsE Feature: gene Location: 65679-66164 bp Ori: AWO28274.1 Feature: domain Description: Sigma70_r4_2 Location: 65739-65811 bp Feature: domain Description: Sigma70_r4_2 Location: 65739-65811 bp Feature: domain Description: Sigma70_r4_2 Location: 65880-65940 bp Feature: domain Description: Sigma70_r4_2 Location: 65880-65940 bp Feature: gene Location: 66286-67030 bp Feature: domain Description: PRK10173 Location: 66289-66727 bp Feature: domain Description: PRK10173 Location: 662 89-6672 7 bp Feature: gene Location: 67069-67572 bp Ori: AWO28275.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67342-67411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67342 -67411 bp Feature: gene Location: 67866-68237 bp Feature: gene Location: 68230-68969 bp Feature: domain Description: InsE Location: 68233-68569 bp Feature: domain Description: InsE Location: 682 33-68569 bp Feature: gene Location: 79306-80045 bp Feature: domain Description: InsE Location: 79309-79645 bp Feature: domain Description: InsE Location: 79309-79645 bp Feature: gene Location: 80038-80409 bp Feature: gene Location: 80703-82226 bp Ori: AWO28291.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80976-81708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80976-81708 bp Feature: domain Description: GIIM Note: maturase Location: 81783-81981 bp Feature: domain Description: GIIM Note: maturase Location: 81783-81981 bp Feature: gene Location: 82316-82699 bp Feature: domain Description: PHA02517 Location: 82322-82655 bp Feature: domain Description: PHA02 517 Location: 82 32 2 -82 655 bp Feature: gene Location: 82728-83132 bp Ori: AWO28292.1 Feature: domain Description: InsE Location: 82758-83094 bp Feature: domain Description: InsE Location: 82 758-83094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4_2 (pfam08281), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, InsE (COG2963), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)