myRT

myRT report for GCA_003183845.1_ASM318384v1

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Seq: CP029603.1 Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome (9269701 bp)
Overview 1 RT 1: 149874-157624 bp 2 RT 2: 200254-207187 bp 3 RT 3: 1385229-1393501 bp 4 RT 4: 1877986-1882005 bp 5 RT 5: 2100031-2106076 bp 6 RT 6: 2365724-2370281 bp 7 RT 7: 2451599-2456349 bp 8 RT 8: 9121363-9131191 bp 9 RT 9: 9193008-9197705 bp 10 RT 10: 9203448-9206861 bp Neighborhood of RT #1 [149874, 157647] BaeS COG4567 RVT-GII GIIM PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII CdnL PreA DUF3470 Neighborhood of RT #2 [200254, 207276] UDG RVT-UG12 PRK12904 SurA_N_3 SurA Neighborhood of RT #3 [1385229, 1393501] PRK08242 fadJ RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM Neighborhood of RT #4 [1877986, 1882005] PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM COG3547 Neighborhood of RT #5 [2100031, 2106810] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII IS285 IS285 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #6 [2365724, 2370286] Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII GIIM PRK06215 Neighborhood of RT #7 [2451599, 2457001] RVT-GII GIIM HTH_Tnp_1 COG3547 Neighborhood of RT #8 [9121363, 9131205] 4HBT_3 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII PRK09344 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Neighborhood of RT #9 [9193008, 9197767] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #10 [9203448, 9207277] DDE_Tnp_1_4 RVT-GII RVT-GII MmsB Rve Feature: gene Location: 149874-151298 bp Ori: AWO87255.1 Feature: domain Description: BaeS Location: 150198-151269 bp Feature: domain Description: BaeS Location: 1 501 98-1 51 269 bp Feature: gene Location: 151288-151821 bp Ori: AWO87256.1 Feature: domain Description: COG4567 Location: 151294-151819 bp Feature: domain Description: COG4567 Location: 1 51 294-1 51 81 9 bp Feature: gene Location: 152083-152751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152086-152320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52086-1 52320 bp Feature: domain Description: GIIM Note: maturase Location: 152371-152581 bp Feature: domain Description: GIIM Note: maturase Location: 1 52371 -1 52581 bp Feature: gene Location: 152859-153188 bp Ori: AWO87257.1 Feature: domain Description: PHA00617 Location: 152985-153171 bp Feature: domain Description: PHA0061 7 Location: 1 52985-1 531 71 bp Feature: gene Location: 153329-154984 bp Feature: domain Description: Resolvase Location: 153341-153782 bp Feature: domain Description: Resolvase Location: 1 53341 -1 53782 bp Feature: domain Description: Recombinase Location: 153869-154229 bp Feature: domain Description: Recombinase Location: 1 53869-1 54229 bp Feature: domain Description: Zn_ribbon_recom Location: 154271-154457 bp Feature: domain Description: Zn_ribbon_recom Location: 1 54271 -1 54457 bp Feature: gene Location: 154976-155704 bp Ori: AWO94946.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155312-155702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5531 2-1 55702 bp Feature: gene Location: 156176-157162 bp Ori: AWO87258.1 Feature: domain Description: CdnL Location: 156572-157049 bp Feature: domain Description: CdnL Location: 1 56572-1 57049 bp Feature: gene Location: 157309-157647 bp Ori: AWO87259.1 Feature: domain Description: PreA Location: 157321-157495 bp Feature: domain Description: PreA Location: 1 57321 -1 57495 bp Feature: domain Description: DUF3470 Location: 157501-157624 bp Feature: domain Description: DUF3470 Location: 1 57501 -1 57624 bp Feature: gene Location: 200254-200688 bp Ori: AWO94951.1 Feature: domain Description: UDG Location: 200266-200602 bp Feature: domain Description: UDG Location: 200266-200602 bp Feature: gene Location: 200999-201709 bp Feature: gene Location: 201714-202766 bp Ori: AWO87301.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 202095-202551 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 202095-202551 bp Feature: gene Location: 203159-205999 bp Ori: AWO87302.1 Feature: domain Description: PRK12904 Location: 203171-205991 bp Feature: domain Description: PRK1 2904 Location: 2031 71 -205991 bp Feature: gene Location: 206305-207276 bp Ori: AWO87303.1 Feature: domain Description: SurA_N_3 Location: 206401-206650 bp Feature: domain Description: SurA_N_3 Location: 206401 -206650 bp Feature: domain Description: SurA Location: 206674-207187 bp Feature: domain Description: SurA Location: 206674-2071 87 bp Feature: gene Location: 1385229-1386437 bp Ori: AWO88292.1 Feature: domain Description: PRK08242 Location: 1385232-1386435 bp Feature: domain Description: PRK08242 Location: 1 385232-1 386435 bp Feature: gene Location: 1386458-1388671 bp Ori: AWO88293.1 Feature: domain Description: fadJ Location: 1386470-1388642 bp Feature: domain Description: fadJ Location: 1 386470-1 388642 bp Feature: gene Location: 1389136-1389864 bp Ori: AWO88294.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389472-1389862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 389472-1 389862 bp Feature: gene Location: 1389962-1390291 bp Ori: AWO88295.1 Feature: domain Description: PHA00617 Location: 1390088-1390274 bp Feature: domain Description: PHA0061 7 Location: 1 390088-1 390274 bp Feature: gene Location: 1390432-1392087 bp Feature: domain Description: Resolvase Location: 1390444-1390885 bp Feature: domain Description: Resolvase Location: 1 390444-1 390885 bp Feature: domain Description: Recombinase Location: 1390972-1391332 bp Feature: domain Description: Recombinase Location: 1 390972-1 391 332 bp Feature: domain Description: Zn_ribbon_recom Location: 1391374-1391560 bp Feature: domain Description: Zn_ribbon_recom Location: 1 391 374-1 391 560 bp Feature: gene Location: 1392089-1392757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1392092-1392326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 392092-1 392326 bp Feature: domain Description: GIIM Note: maturase Location: 1392377-1392587 bp Feature: domain Description: GIIM Note: maturase Location: 1 392377-1 392587 bp Feature: gene Location: 1393085-1393303 bp Feature: gene Location: 1393232-1393501 bp Feature: gene Location: 1877986-1878315 bp Ori: AWO88708.1 Feature: domain Description: PHA00617 Location: 1878112-1878298 bp Feature: domain Description: PHA0061 7 Location: 1 8781 1 2-1 878298 bp Feature: gene Location: 1878456-1880069 bp Ori: AWO88709.1 Feature: domain Description: Resolvase Location: 1878468-1878909 bp Feature: domain Description: Resolvase Location: 1 878468-1 878909 bp Feature: domain Description: Recombinase Location: 1878996-1879356 bp Feature: domain Description: Recombinase Location: 1 878996-1 879356 bp Feature: domain Description: Zn_ribbon_recom Location: 1879398-1879584 bp Feature: domain Description: Zn_ribbon_recom Location: 1 879398-1 879584 bp Feature: gene Location: 1880138-1880734 bp Ori: AWO95038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880144-1880363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8801 44-1 880363 bp Feature: domain Description: GIIM Note: maturase Location: 1880438-1880642 bp Feature: domain Description: GIIM Note: maturase Location: 1 880438-1 880642 bp Feature: gene Location: 1880845-1881639 bp Feature: domain Description: COG3547 Location: 1880851-1881583 bp Feature: domain Description: COG3547 Location: 1 880851 -1 881 583 bp Feature: gene Location: 1881763-1882005 bp Feature: gene Location: 2100031-2101407 bp Feature: domain Description: COG4584 Location: 2100127-2100928 bp Feature: domain Description: COG4584 Location: 21 001 27-21 00928 bp Feature: domain Description: COG4584 Location: 2100958-2101402 bp Feature: domain Description: COG4584 Location: 21 00958-21 01 402 bp Feature: gene Location: 2101416-2102147 bp Ori: AWO88876.1 Feature: domain Description: IstB_IS21_ATP Location: 2101437-2101521 bp Feature: domain Description: IstB_IS21 _ATP Location: 21 01 437-21 01 521 bp Feature: domain Description: IstB_IS21 Location: 2101527-2101974 bp Feature: domain Description: IstB_IS21 Location: 21 01 527-21 01 974 bp Feature: gene Location: 2102202-2102660 bp Ori: AWO88877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2102424-2102523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 02424-21 02523 bp Feature: gene Location: 2102918-2103361 bp Feature: domain Description: IS285 Location: 2102921-2102996 bp Feature: domain Description: IS285 Location: 21 02921 -21 02996 bp Feature: domain Description: IS285 Location: 2103233-2103359 bp Feature: domain Description: IS285 Location: 21 03233-21 03359 bp Feature: gene Location: 2103631-2104377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103985-2104378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 03985-21 04378 bp Feature: gene Location: 2104478-2104807 bp Ori: AWO88878.1 Feature: domain Description: PHA00617 Location: 2104604-2104790 bp Feature: domain Description: PHA0061 7 Location: 21 04604-21 04790 bp Feature: gene Location: 2104948-2106810 bp Ori: AWO88879.1 Feature: domain Description: Resolvase Location: 2104960-2105401 bp Feature: domain Description: Resolvase Location: 21 04960-21 05401 bp Feature: domain Description: Recombinase Location: 2105488-2105848 bp Feature: domain Description: Recombinase Location: 21 05488-21 05848 bp Feature: domain Description: Zn_ribbon_recom Location: 2105890-2106076 bp Feature: domain Description: Zn_ribbon_recom Location: 21 05890-21 06076 bp Feature: gene Location: 2365724-2367481 bp Ori: AWO89044.1 Feature: domain Description: Resolvase Location: 2365736-2366177 bp Feature: domain Description: Resolvase Location: 2365736-23661 77 bp Feature: domain Description: Recombinase Location: 2366264-2366624 bp Feature: domain Description: Recombinase Location: 2366264-2366624 bp Feature: domain Description: Zn_ribbon_recom Location: 2366666-2366852 bp Feature: domain Description: Zn_ribbon_recom Location: 2366666-2366852 bp Feature: gene Location: 2367622-2367951 bp Ori: AWO89045.1 Feature: domain Description: PHA00617 Location: 2367748-2367934 bp Feature: domain Description: PHA0061 7 Location: 2367748-2367934 bp Feature: gene Location: 2368086-2368682 bp Ori: AWO89046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368098-2368311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368098-236831 1 bp Feature: domain Description: GIIM Note: maturase Location: 2368386-2368590 bp Feature: domain Description: GIIM Note: maturase Location: 2368386-2368590 bp Feature: gene Location: 2368854-2368964 bp Feature: gene Location: 2369495-2370286 bp Ori: AWO89047.1 Feature: domain Description: PRK06215 Location: 2369531-2370281 bp Feature: domain Description: PRK0621 5 Location: 2369531 -2370281 bp Feature: gene Location: 2451599-2451832 bp Feature: gene Location: 2453162-2453344 bp Feature: gene Location: 2453341-2454585 bp Ori: AWO89116.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2453542-2454196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2453542-24541 96 bp Feature: domain Description: GIIM Note: maturase Location: 2454277-2454505 bp Feature: domain Description: GIIM Note: maturase Location: 2454277-2454505 bp Feature: gene Location: 2454762-2455866 bp Feature: domain Description: HTH_Tnp_1 Location: 2454768-2454975 bp Feature: domain Description: HTH_Tnp_1 Location: 2454768-2454975 bp Feature: gene Location: 2455956-2457001 bp Feature: domain Description: COG3547 Location: 2455974-2456349 bp Feature: domain Description: COG3547 Location: 2455974-2456349 bp Feature: gene Location: 9121363-9121581 bp Feature: gene Location: 9121580-9122395 bp Ori: AWO94818.1 Feature: domain Description: 4HBT_3 Location: 9121682-9122384 bp Feature: domain Description: 4HBT_3 Location: 91 21 682-91 22384 bp Feature: gene Location: 9122592-9123260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9122595-9122829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 22595-91 22829 bp Feature: domain Description: GIIM Note: maturase Location: 9122880-9123090 bp Feature: domain Description: GIIM Note: maturase Location: 91 22880-91 23090 bp Feature: gene Location: 9123262-9124917 bp Feature: domain Description: Resolvase Location: 9123274-9123715 bp Feature: domain Description: Resolvase Location: 91 23274-91 2371 5 bp Feature: domain Description: Recombinase Location: 9123802-9124162 bp Feature: domain Description: Recombinase Location: 91 23802-91 241 62 bp Feature: domain Description: Zn_ribbon_recom Location: 9124204-9124390 bp Feature: domain Description: Zn_ribbon_recom Location: 91 24204-91 24390 bp Feature: gene Location: 9125058-9125387 bp Ori: AWO94819.1 Feature: domain Description: PHA00617 Location: 9125184-9125370 bp Feature: domain Description: PHA0061 7 Location: 91 251 84-91 25370 bp Feature: gene Location: 9125485-9126213 bp Ori: AWO94820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9125821-9126211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 25821 -91 2621 1 bp Feature: gene Location: 9126677-9128293 bp Ori: AWO94821.1 Feature: domain Description: PRK09344 Location: 9126716-9128273 bp Feature: domain Description: PRK09344 Location: 91 2671 6-91 28273 bp Feature: gene Location: 9128578-9131205 bp Ori: AWO94822.1 Feature: domain Description: TPR_12 Location: 9128713-9128920 bp Feature: domain Description: TPR_1 2 Location: 91 2871 3-91 28920 bp Feature: domain Description: TPR_12 Location: 9128959-9129172 bp Feature: domain Description: TPR_1 2 Location: 91 28959-91 291 72 bp Feature: domain Description: TPR_12 Location: 9129199-9129421 bp Feature: domain Description: TPR_1 2 Location: 91 291 99-91 29421 bp Feature: domain Description: TPR_10 Location: 9129457-9129541 bp Feature: domain Description: TPR_1 0 Location: 91 29457-91 29541 bp Feature: domain Description: CHAT Location: 9130174-9131191 bp Feature: domain Description: CHAT Location: 91 301 74-91 31 1 91 bp Feature: gene Location: 9193008-9193610 bp Feature: domain Description: INT_RitC_C_like Location: 9193050-9193605 bp Feature: domain Description: INT_RitC_C_like Location: 91 93050-91 93605 bp Feature: gene Location: 9193618-9194407 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9193621-9194047 bp Feature: domain Description: DDE_Tnp_IS66 Location: 91 93621 -91 94047 bp Feature: gene Location: 9194556-9195887 bp Ori: AWO94874.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9194850-9195513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 94850-91 9551 3 bp Feature: domain Description: GIIM Note: maturase Location: 9195579-9195801 bp Feature: domain Description: GIIM Note: maturase Location: 91 95579-91 95801 bp Feature: gene Location: 9195820-9196655 bp Feature: domain Description: LomR Location: 9195856-9196393 bp Feature: domain Description: LomR Location: 91 95856-91 96393 bp Feature: gene Location: 9197099-9197767 bp Ori: AWO94875.1 Feature: domain Description: PHA02518 Location: 9197108-9197705 bp Feature: domain Description: PHA0251 8 Location: 91 971 08-91 97705 bp Feature: gene Location: 9203448-9203852 bp Feature: gene Location: 9204025-9204480 bp Ori: AWO94883.1 Feature: domain Description: DDE_Tnp_1_4 Location: 9204061-9204235 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 9204061 -9204235 bp Feature: gene Location: 9204562-9206392 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205306-9205384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205306-9205384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205636-9205999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205636-9205999 bp Feature: gene Location: 9206393-9206557 bp Ori: AWO95461.1 Feature: domain Description: MmsB Location: 9206405-9206516 bp Feature: domain Description: MmsB Location: 9206405-920651 6 bp Feature: gene Location: 9206564-9207277 bp Feature: domain Description: Rve Location: 9206582-9206861 bp Feature: domain Description: Rve Location: 9206582-9206861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), RVT-GII, GIIM (pfam08388), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), CdnL (COG1329), PreA (COG1146)
DUF3470 (pfam11953), UDG (smart00986), RVT-UG12, PRK12904 (preprotein translocase subunit SecA; Reviewed), SurA_N_3 (pfam13624), SurA (COG0760), PRK08242 (acetyl-CoA C-acetyltransferase), fadJ (PRK11154), COG3547 (Transposase ), COG4584 (Transposase )
IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), IS285 (COG3328), PRK06215 (hypothetical protein; Provisional), HTH_Tnp_1 (pfam01527), 4HBT_3 (pfam13622), PRK09344 (phosphoenolpyruvate carboxykinase), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770)
INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), DDE_Tnp_1_4 (pfam13701), MmsB (COG2084), Rve (COG3316)