myRT

myRT report for GCA_003183845.2_ASM318384v2

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Seq: CP029603.2 Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome (9270175 bp)
Overview 1 RT 1: 149731-157454 bp 2 RT 2: 200086-207019 bp 3 RT 3: 1385137-1391468 bp 4 RT 4: 1877921-1882698 bp 5 RT 5: 2101363-2110600 bp 6 RT 6: 2365684-2371148 bp 7 RT 7: 2450799-2456316 bp 8 RT 8: 9123114-9131445 bp 9 RT 9: 9193260-9197994 bp 10 RT 10: 9203737-9207406 bp Neighborhood of RT #1 [149731, 157477] BaeS COG4567 RVT-GII GIIM PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII CdnL PreA DUF3470 Neighborhood of RT #2 [200086, 207108] UDG RVT-UG12 PRK12904 SurA_N_3 SurA Neighborhood of RT #3 [1385137, 1392430] PRK08242 fadJ RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #4 [1877921, 1882871] PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM COG3547 VirB10 Neighborhood of RT #5 [2101363, 2110689] IstB_IS21_ATP IstB_IS21 IS285 IS285 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII CpaD Neighborhood of RT #6 [2365684, 2371148] Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII GIIM PRK06215 Neighborhood of RT #7 [2450799, 2456968] RVT-GII GIIM HTH_Tnp_1 COG3547 Neighborhood of RT #8 [9123114, 9131459] Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII PRK09344 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Neighborhood of RT #9 [9193260, 9198056] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #10 [9203737, 9207592] DDE_Tnp_1_4 RVT-GII RVT-GII MmsB Rve Rve Feature: gene Location: 149731-151128 bp Ori: AWO87255.2 Feature: domain Description: BaeS Location: 150028-151099 bp Feature: domain Description: BaeS Location: 1 50028-1 51 099 bp Feature: gene Location: 151118-151651 bp Ori: AWO87256.1 Feature: domain Description: COG4567 Location: 151124-151649 bp Feature: domain Description: COG4567 Location: 1 51 1 24-1 51 649 bp Feature: gene Location: 151913-152581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151916-152150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 91 6-1 521 50 bp Feature: domain Description: GIIM Note: maturase Location: 152201-152411 bp Feature: domain Description: GIIM Note: maturase Location: 1 52201 -1 5241 1 bp Feature: gene Location: 152689-153018 bp Ori: AWO87257.1 Feature: domain Description: PHA00617 Location: 152815-153001 bp Feature: domain Description: PHA0061 7 Location: 1 5281 5-1 53001 bp Feature: gene Location: 153159-154814 bp Feature: domain Description: Resolvase Location: 153171-153612 bp Feature: domain Description: Resolvase Location: 1 531 71 -1 5361 2 bp Feature: domain Description: Recombinase Location: 153699-154059 bp Feature: domain Description: Recombinase Location: 1 53699-1 54059 bp Feature: domain Description: Zn_ribbon_recom Location: 154101-154287 bp Feature: domain Description: Zn_ribbon_recom Location: 1 541 01 -1 54287 bp Feature: gene Location: 154806-155525 bp Ori: AWO94946.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155133-155523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 551 33-1 55523 bp Feature: gene Location: 156006-156794 bp Ori: AWO87258.2 Feature: domain Description: CdnL Location: 156204-156681 bp Feature: domain Description: CdnL Location: 1 56204-1 56681 bp Feature: gene Location: 157139-157477 bp Ori: AWO87259.1 Feature: domain Description: PreA Location: 157151-157325 bp Feature: domain Description: PreA Location: 1 571 51 -1 57325 bp Feature: domain Description: DUF3470 Location: 157331-157454 bp Feature: domain Description: DUF3470 Location: 1 57331 -1 57454 bp Feature: gene Location: 200086-200781 bp Ori: QJS40763.1 Feature: domain Description: UDG Location: 200353-200692 bp Feature: domain Description: UDG Location: 200353-200692 bp Feature: gene Location: 200831-201541 bp Feature: gene Location: 201546-202598 bp Ori: AWO87301.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 201927-202383 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 201 927-202383 bp Feature: gene Location: 202991-205831 bp Ori: AWO87302.1 Gene: secA Feature: domain Description: PRK12904 Location: 203003-205823 bp Feature: domain Description: PRK1 2904 Location: 203003-205823 bp Feature: gene Location: 206185-207108 bp Ori: AWO87303.2 Feature: domain Description: SurA_N_3 Location: 206233-206482 bp Feature: domain Description: SurA_N_3 Location: 206233-206482 bp Feature: domain Description: SurA Location: 206506-207019 bp Feature: domain Description: SurA Location: 206506-20701 9 bp Feature: gene Location: 1385137-1386345 bp Ori: AWO88292.1 Feature: domain Description: PRK08242 Location: 1385140-1386343 bp Feature: domain Description: PRK08242 Location: 1 3851 40-1 386343 bp Feature: gene Location: 1386366-1388579 bp Ori: AWO88293.1 Feature: domain Description: fadJ Location: 1386378-1388550 bp Feature: domain Description: fadJ Location: 1 386378-1 388550 bp Feature: gene Location: 1389053-1389772 bp Ori: AWO88294.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389380-1389770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 389380-1 389770 bp Feature: gene Location: 1389870-1390199 bp Ori: AWO88295.1 Feature: domain Description: PHA00617 Location: 1389996-1390182 bp Feature: domain Description: PHA0061 7 Location: 1 389996-1 3901 82 bp Feature: gene Location: 1390340-1392430 bp Ori: QJS40809.1 Feature: domain Description: Resolvase Location: 1390352-1390793 bp Feature: domain Description: Resolvase Location: 1 390352-1 390793 bp Feature: domain Description: Recombinase Location: 1390880-1391240 bp Feature: domain Description: Recombinase Location: 1 390880-1 391 240 bp Feature: domain Description: Zn_ribbon_recom Location: 1391282-1391468 bp Feature: domain Description: Zn_ribbon_recom Location: 1 391 282-1 391 468 bp Feature: gene Location: 1877921-1878250 bp Ori: AWO88708.1 Feature: domain Description: PHA00617 Location: 1878047-1878233 bp Feature: domain Description: PHA0061 7 Location: 1 878047-1 878233 bp Feature: gene Location: 1878391-1880116 bp Feature: domain Description: Resolvase Location: 1878403-1878844 bp Feature: domain Description: Resolvase Location: 1 878403-1 878844 bp Feature: domain Description: Recombinase Location: 1878931-1879291 bp Feature: domain Description: Recombinase Location: 1 878931 -1 879291 bp Feature: domain Description: Zn_ribbon_recom Location: 1879333-1879519 bp Feature: domain Description: Zn_ribbon_recom Location: 1 879333-1 87951 9 bp Feature: gene Location: 1880073-1880669 bp Ori: AWO95038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880079-1880298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 880079-1 880298 bp Feature: domain Description: GIIM Note: maturase Location: 1880373-1880577 bp Feature: domain Description: GIIM Note: maturase Location: 1 880373-1 880577 bp Feature: gene Location: 1880780-1881574 bp Feature: domain Description: COG3547 Location: 1880786-1881518 bp Feature: domain Description: COG3547 Location: 1 880786-1 881 51 8 bp Feature: gene Location: 1882566-1882871 bp Ori: AWO88712.1 Feature: domain Description: VirB10 Location: 1882569-1882698 bp Feature: domain Description: VirB1 0 Location: 1 882569-1 882698 bp Feature: gene Location: 2101363-2102072 bp Feature: domain Description: IstB_IS21_ATP Location: 2101384-2101468 bp Feature: domain Description: IstB_IS21 _ATP Location: 21 01 384-21 01 468 bp Feature: domain Description: IstB_IS21 Location: 2101474-2101921 bp Feature: domain Description: IstB_IS21 Location: 21 01 474-21 01 921 bp Feature: gene Location: 2102865-2103308 bp Feature: domain Description: IS285 Location: 2102868-2102943 bp Feature: domain Description: IS285 Location: 21 02868-21 02943 bp Feature: domain Description: IS285 Location: 2103180-2103306 bp Feature: domain Description: IS285 Location: 21 031 80-21 03306 bp Feature: gene Location: 2103578-2104324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103932-2104325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 03932-21 04325 bp Feature: gene Location: 2104425-2104754 bp Ori: AWO88878.1 Feature: domain Description: PHA00617 Location: 2104551-2104737 bp Feature: domain Description: PHA0061 7 Location: 21 04551 -21 04737 bp Feature: gene Location: 2104895-2106553 bp Feature: domain Description: Resolvase Location: 2104907-2105348 bp Feature: domain Description: Resolvase Location: 21 04907-21 05348 bp Feature: domain Description: Recombinase Location: 2105435-2105795 bp Feature: domain Description: Recombinase Location: 21 05435-21 05795 bp Feature: domain Description: Zn_ribbon_recom Location: 2105837-2106023 bp Feature: domain Description: Zn_ribbon_recom Location: 21 05837-21 06023 bp Feature: gene Location: 2106552-2107223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2106555-2106858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 06555-21 06858 bp Feature: gene Location: 2107516-2109831 bp Feature: gene Location: 2110027-2110689 bp Ori: AWO88882.1 Feature: domain Description: CpaD Location: 2110060-2110600 bp Feature: domain Description: CpaD Location: 21 1 0060-21 1 0600 bp Feature: gene Location: 2365684-2367441 bp Ori: AWO89044.1 Feature: domain Description: Resolvase Location: 2365696-2366137 bp Feature: domain Description: Resolvase Location: 2365696-23661 37 bp Feature: domain Description: Recombinase Location: 2366224-2366584 bp Feature: domain Description: Recombinase Location: 2366224-2366584 bp Feature: domain Description: Zn_ribbon_recom Location: 2366626-2366812 bp Feature: domain Description: Zn_ribbon_recom Location: 2366626-236681 2 bp Feature: gene Location: 2367582-2367911 bp Ori: AWO89045.1 Feature: domain Description: PHA00617 Location: 2367708-2367894 bp Feature: domain Description: PHA0061 7 Location: 2367708-2367894 bp Feature: gene Location: 2368046-2368642 bp Ori: AWO89046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368058-2368271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368058-2368271 bp Feature: domain Description: GIIM Note: maturase Location: 2368346-2368550 bp Feature: domain Description: GIIM Note: maturase Location: 2368346-2368550 bp Feature: gene Location: 2369455-2370246 bp Ori: AWO89047.1 Feature: domain Description: PRK06215 Location: 2369491-2370241 bp Feature: domain Description: PRK0621 5 Location: 2369491 -2370241 bp Feature: gene Location: 2370942-2371148 bp Feature: gene Location: 2450799-2451098 bp Feature: gene Location: 2451566-2451799 bp Feature: gene Location: 2453308-2454552 bp Ori: AWO89116.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2453509-2454163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2453509-24541 63 bp Feature: domain Description: GIIM Note: maturase Location: 2454244-2454472 bp Feature: domain Description: GIIM Note: maturase Location: 2454244-2454472 bp Feature: gene Location: 2454729-2455833 bp Feature: domain Description: HTH_Tnp_1 Location: 2454735-2454942 bp Feature: domain Description: HTH_Tnp_1 Location: 2454735-2454942 bp Feature: gene Location: 2455923-2456968 bp Feature: domain Description: COG3547 Location: 2455941-2456316 bp Feature: domain Description: COG3547 Location: 2455941 -245631 6 bp Feature: gene Location: 9123114-9125204 bp Ori: QJS41203.1 Feature: domain Description: Resolvase Location: 9123126-9123567 bp Feature: domain Description: Resolvase Location: 91 231 26-91 23567 bp Feature: domain Description: Recombinase Location: 9123654-9124014 bp Feature: domain Description: Recombinase Location: 91 23654-91 2401 4 bp Feature: domain Description: Zn_ribbon_recom Location: 9124056-9124242 bp Feature: domain Description: Zn_ribbon_recom Location: 91 24056-91 24242 bp Feature: gene Location: 9125345-9125674 bp Ori: AWO94819.1 Feature: domain Description: PHA00617 Location: 9125471-9125657 bp Feature: domain Description: PHA0061 7 Location: 91 25471 -91 25657 bp Feature: gene Location: 9125772-9126491 bp Ori: AWO94820.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9126099-9126489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 26099-91 26489 bp Feature: gene Location: 9126964-9128580 bp Ori: AWO94821.1 Feature: domain Description: PRK09344 Location: 9127003-9128560 bp Feature: domain Description: PRK09344 Location: 91 27003-91 28560 bp Feature: gene Location: 9128865-9131459 bp Ori: AWO94822.2 Feature: domain Description: TPR_12 Location: 9128967-9129174 bp Feature: domain Description: TPR_1 2 Location: 91 28967-91 291 74 bp Feature: domain Description: TPR_12 Location: 9129213-9129426 bp Feature: domain Description: TPR_1 2 Location: 91 2921 3-91 29426 bp Feature: domain Description: TPR_12 Location: 9129453-9129675 bp Feature: domain Description: TPR_1 2 Location: 91 29453-91 29675 bp Feature: domain Description: TPR_10 Location: 9129711-9129795 bp Feature: domain Description: TPR_1 0 Location: 91 2971 1 -91 29795 bp Feature: domain Description: CHAT Location: 9130428-9131445 bp Feature: domain Description: CHAT Location: 91 30428-91 31 445 bp Feature: gene Location: 9193260-9193898 bp Feature: domain Description: INT_RitC_C_like Location: 9193338-9193893 bp Feature: domain Description: INT_RitC_C_like Location: 91 93338-91 93893 bp Feature: gene Location: 9193906-9194695 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9193909-9194335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 91 93909-91 94335 bp Feature: gene Location: 9194844-9196175 bp Ori: AWO94874.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9195138-9195801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 951 38-91 95801 bp Feature: domain Description: GIIM Note: maturase Location: 9195867-9196089 bp Feature: domain Description: GIIM Note: maturase Location: 91 95867-91 96089 bp Feature: gene Location: 9196108-9196944 bp Ori: QJS41206.1 Feature: domain Description: LomR Location: 9196144-9196855 bp Feature: domain Description: LomR Location: 91 961 44-91 96855 bp Feature: gene Location: 9197388-9198056 bp Ori: AWO94875.1 Feature: domain Description: PHA02518 Location: 9197397-9197994 bp Feature: domain Description: PHA0251 8 Location: 91 97397-91 97994 bp Feature: gene Location: 9203737-9204141 bp Feature: gene Location: 9204314-9204769 bp Ori: AWO94883.1 Feature: domain Description: DDE_Tnp_1_4 Location: 9204350-9204524 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 9204350-9204524 bp Feature: gene Location: 9204868-9206346 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205276-9205354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205276-9205354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205606-9205969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205606-9205969 bp Feature: gene Location: 9206719-9206838 bp Feature: domain Description: MmsB Location: 9206722-9206830 bp Feature: domain Description: MmsB Location: 9206722-9206830 bp Feature: gene Location: 9206854-9207592 bp Feature: domain Description: Rve Location: 9206881-9207046 bp Feature: domain Description: Rve Location: 9206881 -9207046 bp Feature: domain Description: Rve Location: 9207163-9207406 bp Feature: domain Description: Rve Location: 92071 63-9207406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), RVT-GII, GIIM (pfam08388), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), CdnL (COG1329), PreA (COG1146)
DUF3470 (pfam11953), UDG (smart00986), RVT-UG12, PRK12904 (preprotein translocase subunit SecA; Reviewed), SurA_N_3 (pfam13624), SurA (COG0760), PRK08242 (acetyl-CoA C-acetyltransferase), fadJ (PRK11154), COG3547 (Transposase ), VirB10 (COG2948)
IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), IS285 (COG3328), CpaD (COG5461), PRK06215 (hypothetical protein; Provisional), HTH_Tnp_1 (pfam01527), PRK09344 (phosphoenolpyruvate carboxykinase), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770)
INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), DDE_Tnp_1_4 (pfam13701), MmsB (COG2084), Rve (COG3316)