myRT

myRT report for GCA_003184265.1_ASM318426v1

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Seq: CP027663.1 Acidiferrobacter sp. SPIII_3 chromosome, complete genome (3398398 bp)
Overview 1 RT 1: 663757-669318 bp 2 RT 2: 828631-830945 bp 3 RT 3: 1412131-1419211 bp 4 RT 4: 2211186-2218397 bp Neighborhood of RT #1 [663757, 669318] DUF4338 DUF4338 RVT-GII COG3177 Neighborhood of RT #2 [828631, 830959] PemK_toxin RVT-GII VagC PIN_CcVapC1-like Neighborhood of RT #3 [1412131, 1419225] SrmB RVT-GII RVT-GII GIIM MASE4 GGDEF DUF2784 Neighborhood of RT #4 [2211186, 2218435] YbjD YbjD DEXQc_UvrD DEXQc_UvrD UvrD RVT-GII TnpB_IS66 Feature: gene Location: 663757-664353 bp Ori: AWP22526.1 Feature: domain Description: DUF4338 Location: 663769-663880 bp Feature: domain Description: DUF4338 Location: 663769-663880 bp Feature: domain Description: DUF4338 Location: 663976-664213 bp Feature: domain Description: DUF4338 Location: 663976-66421 3 bp Feature: gene Location: 664568-664927 bp Feature: gene Location: 665802-667232 bp Ori: AWP22528.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666162-666855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6661 62-666855 bp Feature: gene Location: 667452-668810 bp Ori: AWP22529.1 Feature: domain Description: COG3177 Location: 667830-668427 bp Feature: domain Description: COG31 77 Location: 667830-668427 bp Feature: gene Location: 669226-669318 bp Feature: gene Location: 828631-828822 bp Feature: gene Location: 828813-829326 bp Feature: domain Description: PemK_toxin Location: 828825-829047 bp Feature: domain Description: PemK_toxin Location: 828825-829047 bp Feature: gene Location: 829343-830059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829355-829604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829355-829604 bp Feature: gene Location: 830316-830552 bp Ori: AWP24903.1 Feature: domain Description: VagC Location: 830328-830550 bp Feature: domain Description: VagC Location: 830328-830550 bp Feature: gene Location: 830549-830959 bp Ori: AWP22671.1 Feature: domain Description: PIN_CcVapC1-like Location: 830567-830945 bp Feature: domain Description: PIN_CcVapC1 -like Location: 830567-830945 bp Feature: gene Location: 1412131-1412688 bp Feature: gene Location: 1412915-1414249 bp Ori: AWP23112.1 Feature: domain Description: SrmB Location: 1412918-1414022 bp Feature: domain Description: SrmB Location: 1 41 291 8-1 41 4022 bp Feature: gene Location: 1414717-1415289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1415047-1415278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 5047-1 41 5278 bp Feature: gene Location: 1415898-1417115 bp Ori: AWP23113.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416039-1416666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 6039-1 41 6666 bp Feature: domain Description: GIIM Note: maturase Location: 1416717-1416939 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 671 7-1 41 6939 bp Feature: gene Location: 1417243-1418664 bp Ori: AWP23114.1 Feature: domain Description: MASE4 Location: 1417396-1418065 bp Feature: domain Description: MASE4 Location: 1 41 7396-1 41 8065 bp Feature: domain Description: GGDEF Location: 1418110-1418620 bp Feature: domain Description: GGDEF Location: 1 41 81 1 0-1 41 8620 bp Feature: gene Location: 1418848-1419225 bp Ori: AWP23115.1 Feature: domain Description: DUF2784 Location: 1418869-1419211 bp Feature: domain Description: DUF2784 Location: 1 41 8869-1 41 921 1 bp Feature: gene Location: 2211186-2213525 bp Ori: AWP23804.1 Feature: domain Description: YbjD Location: 2211189-2211333 bp Feature: domain Description: YbjD Location: 221 1 1 89-221 1 333 bp Feature: domain Description: YbjD Location: 2211642-2213076 bp Feature: domain Description: YbjD Location: 221 1 642-221 3076 bp Feature: gene Location: 2213522-2215438 bp Ori: AWP23805.1 Feature: domain Description: DEXQc_UvrD Location: 2213600-2213840 bp Feature: domain Description: DEXQc_UvrD Location: 221 3600-221 3840 bp Feature: domain Description: DEXQc_UvrD Location: 2213912-2214254 bp Feature: domain Description: DEXQc_UvrD Location: 221 391 2-221 4254 bp Feature: domain Description: UvrD Location: 2215082-2215358 bp Feature: domain Description: UvrD Location: 221 5082-221 5358 bp Feature: gene Location: 2215770-2217200 bp Ori: AWP23806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2216130-2216823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 61 30-221 6823 bp Feature: gene Location: 2217702-2218073 bp Feature: gene Location: 2218079-2218435 bp Ori: AWP23808.1 Feature: domain Description: TnpB_IS66 Location: 2218106-2218397 bp Feature: domain Description: TnpB_IS66 Location: 221 81 06-221 8397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4338 (pfam14236), RVT-GII, COG3177 (Fic family protein ), PemK_toxin (pfam02452), VagC (COG4456), PIN_CcVapC1-like (cd18736), SrmB (COG0513), GIIM (pfam08388), MASE4 (pfam17158), GGDEF (TIGR00254)
DUF2784 (pfam10861), YbjD (COG3593), DEXQc_UvrD (cd17932), UvrD (COG0210), TnpB_IS66 (pfam05717)