myRT

myRT report for GCA_003194245.1_ASM319424v1

Download annotations/find similar RTs

Seq: CP023255.1 Pseudomonas aeruginosa strain CCUG 70744 chromosome, complete genome (6859232 bp)
Overview 1 RT 1: 5408026-5418332 bp 2 RT 2: 5434590-5442771 bp 3 RT 3: 5546312-5549850 bp 4 RT 4: 5912958-5919768 bp Neighborhood of RT #1 [5408026, 5418334] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [5434590, 5442785] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [5546312, 5549850] RVT-UG17 SLATT_5 Neighborhood of RT #4 [5912958, 5919965] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 5408026-5409147 bp Ori: AWR46082.1 Feature: domain Description: COG3177 Location: 5408044-5409136 bp Feature: domain Description: COG31 77 Location: 5408044-54091 36 bp Feature: gene Location: 5409406-5409543 bp Feature: gene Location: 5409871-5411556 bp Ori: AWR46084.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5409928-5410168 bp Feature: domain Description: RVT_N Location: 5409928-541 01 68 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5410216-5410852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 021 6-541 0852 bp Feature: domain Description: GIIM Note: maturase Location: 5410906-5411137 bp Feature: domain Description: GIIM Note: maturase Location: 541 0906-541 1 1 37 bp Feature: domain Description: HNH Note: nucleases Location: 5411389-5411527 bp Feature: domain Description: HNH Note: nucleases Location: 541 1 389-541 1 527 bp Feature: gene Location: 5412637-5416374 bp Ori: AWR46085.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5412745-5413402 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 541 2745-541 3402 bp Feature: domain Description: PRK09776 Location: 5413615-5414086 bp Feature: domain Description: PRK09776 Location: 541 361 5-541 4086 bp Feature: domain Description: PAS Location: 5414176-5414668 bp Feature: domain Description: PAS Location: 541 41 76-541 4668 bp Feature: domain Description: PRK10060 Location: 5414677-5416324 bp Feature: domain Description: PRK1 0060 Location: 541 4677-541 6324 bp Feature: gene Location: 5416481-5418334 bp Ori: AWR46086.1 Feature: domain Description: PRK05658 Location: 5416493-5418332 bp Feature: domain Description: PRK05658 Location: 541 6493-541 8332 bp Feature: gene Location: 5434590-5435882 bp Ori: AWR46104.1 Feature: domain Description: PRK10770 Location: 5434680-5435874 bp Feature: domain Description: PRK1 0770 Location: 5434680-5435874 bp Feature: gene Location: 5435863-5438652 bp Ori: AWR46105.1 Feature: domain Description: LptD Location: 5436058-5438638 bp Feature: domain Description: LptD Location: 5436058-5438638 bp Feature: gene Location: 5438785-5440497 bp Ori: AWR46106.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5438842-5439085 bp Feature: domain Description: RVT_N Location: 5438842-5439085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5439130-5439766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54391 30-5439766 bp Feature: domain Description: YkfC Location: 5439976-5440126 bp Feature: domain Description: YkfC Location: 5439976-54401 26 bp Feature: domain Description: HNH Note: nucleases Location: 5440303-5440441 bp Feature: domain Description: HNH Note: nucleases Location: 5440303-5440441 bp Feature: gene Location: 5440684-5440896 bp Feature: gene Location: 5441769-5442785 bp Ori: AWR46108.1 Feature: domain Description: COG3178 Location: 5441772-5442771 bp Feature: domain Description: COG31 78 Location: 5441 772-5442771 bp Feature: gene Location: 5546312-5546737 bp Feature: gene Location: 5546754-5547224 bp Feature: gene Location: 5547266-5548630 bp Ori: AWR46214.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5547494-5548097 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 5547494-5548097 bp Feature: gene Location: 5548627-5549169 bp Ori: AWR46215.1 Feature: domain Description: SLATT_5 Location: 5548633-5549143 bp Feature: domain Description: SLATT_5 Location: 5548633-55491 43 bp Feature: gene Location: 5549530-5549850 bp Feature: gene Location: 5912958-5913785 bp Ori: AWR46549.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 5912988-5913702 bp Feature: domain Description: ABC_phnC Location: 591 2988-591 3702 bp Feature: gene Location: 5914128-5914638 bp Feature: domain Description: DUF772 Location: 5914278-5914473 bp Feature: domain Description: DUF772 Location: 591 4278-591 4473 bp Feature: gene Location: 5915158-5916426 bp Ori: AWR46550.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5915371-5916028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591 5371 -591 6028 bp Feature: domain Description: GIIM Note: maturase Location: 5916106-5916328 bp Feature: domain Description: GIIM Note: maturase Location: 591 61 06-591 6328 bp Feature: gene Location: 5916576-5916902 bp Feature: gene Location: 5918421-5919965 bp Ori: AWR46551.1 Feature: domain Description: CHD Location: 5918637-5919051 bp Feature: domain Description: CHD Location: 591 8637-591 9051 bp Feature: domain Description: CHD Location: 5919279-5919768 bp Feature: domain Description: CHD Location: 591 9279-591 9768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-UG17, SLATT_5 (pfam18160), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302)