myRT

myRT report for GCA_003204335.1_ASM320433v1

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Seq: CP029745.1 Pseudomonas aeruginosa strain AR_0110 chromosome, complete genome (6799785 bp)
Overview 1 RT 1: 28631-36822 bp 2 RT 2: 53087-63384 bp Neighborhood of RT #1 [28631, 36830] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [53087, 63395] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 28631-29647 bp Ori: AWS87463.1 Feature: domain Description: COG3178 Location: 28634-29633 bp Feature: domain Description: COG31 78 Location: 28634-29633 bp Feature: gene Location: 30520-30732 bp Feature: gene Location: 30920-32632 bp Ori: AWS87464.1 Gene: ltrA Feature: domain Description: RVT_N Location: 30977-31220 bp Feature: domain Description: RVT_N Location: 30977-31 220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31265-31901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 265-31 901 bp Feature: domain Description: YkfC Location: 32108-32261 bp Feature: domain Description: YkfC Location: 321 08-32261 bp Feature: domain Description: HNH Note: nucleases Location: 32438-32576 bp Feature: domain Description: HNH Note: nucleases Location: 32438-32576 bp Feature: gene Location: 32765-35557 bp Ori: AWS87465.1 Feature: domain Description: LptD Location: 32960-35543 bp Feature: domain Description: LptD Location: 32960-35543 bp Feature: gene Location: 35538-36830 bp Ori: AWS87466.1 Feature: domain Description: PRK10770 Location: 35628-36822 bp Feature: domain Description: PRK1 0770 Location: 35628-36822 bp Feature: gene Location: 53087-54940 bp Ori: AWS87484.1 Feature: domain Description: PRK05658 Location: 53099-54938 bp Feature: domain Description: PRK05658 Location: 53099-54938 bp Feature: gene Location: 55047-58784 bp Ori: AWS87485.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 55155-55812 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 551 55-5581 2 bp Feature: domain Description: PRK09776 Location: 56025-56496 bp Feature: domain Description: PRK09776 Location: 56025-56496 bp Feature: domain Description: PAS Location: 56568-57078 bp Feature: domain Description: PAS Location: 56568-57078 bp Feature: domain Description: PRK10060 Location: 57087-58734 bp Feature: domain Description: PRK1 0060 Location: 57087-58734 bp Feature: gene Location: 59865-61550 bp Ori: AWS87486.1 Gene: ltrA Feature: domain Description: RVT_N Location: 59922-60162 bp Feature: domain Description: RVT_N Location: 59922-601 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60210-60846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6021 0-60846 bp Feature: domain Description: GIIM Note: maturase Location: 60900-61131 bp Feature: domain Description: GIIM Note: maturase Location: 60900-61 1 31 bp Feature: domain Description: HNH Note: nucleases Location: 61383-61521 bp Feature: domain Description: HNH Note: nucleases Location: 61 383-61 521 bp Feature: gene Location: 61878-62015 bp Feature: gene Location: 62274-63395 bp Ori: AWS87488.1 Feature: domain Description: COG3177 Location: 62292-63384 bp Feature: domain Description: COG31 77 Location: 62292-63384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )