myRT

myRT report for GCA_003231115.1_ASM323111v1

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Seq: CP029492.1 Escherichia coli strain HS30-1 chromosome, complete genome (4423666 bp)
Overview 1 RT 1: 3463975-3467565 bp Neighborhood of RT #1 [3463975, 3467565] PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 3463975-3464385 bp Ori: AWU91741.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 3464047-3464359 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 3464047-3464359 bp Feature: gene Location: 3464767-3465249 bp Feature: gene Location: 3465244-3466176 bp Ori: AWU91743.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3465346-3465937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3465346-3465937 bp Feature: gene Location: 3466163-3467131 bp Feature: gene Location: 3467332-3467565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: CP029493.1 Escherichia coli strain HS30-1 plasmid pHS30-1, complete sequence (179444 bp)
Overview 1 RT 1: 81183-84399 bp 2 RT 2: 167294-172620 bp Neighborhood of RT #1 [81183, 84399] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII InsE Neighborhood of RT #2 [167294, 172637] InsE RVT-GII GIIM PRK11114 Feature: gene Location: 81183-81491 bp Feature: domain Description: Rep_3 Location: 81189-81453 bp Feature: domain Description: Rep_3 Location: 81189-81453 bp Feature: gene Location: 81501-82198 bp Feature: domain Description: Zn_Tnp_IS1 Location: 81507-81609 bp Feature: domain Description: Zn_Tnp_IS1 Location: 81507-81609 bp Feature: domain Description: HTH_Tnp_IS1 Location: 81630-81762 bp Feature: domain Description: HTH_Tnp_IS1 Location: 81630-81762 bp Feature: gene Location: 82350-83468 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82386-83076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 386-83076 bp Feature: gene Location: 84399-84723 bp Ori: AWU92775.1 Feature: domain Description: InsE Location: 84402-84723 bp Feature: domain Description: InsE Location: 84402 -8472 3 bp Feature: gene Location: 83510-84399 bp Feature: gene Location: 167294-167618 bp Ori: AOO35075.2 Feature: domain Description: InsE Location: 167297-167618 bp Feature: domain Description: InsE Location: 1672 97-167618 bp Feature: gene Location: 167618-168507 bp Feature: gene Location: 168550-169743 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168838-169456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168838-169456 bp Feature: domain Description: GIIM Note: maturase Location: 169504-169735 bp Feature: domain Description: GIIM Note: maturase Location: 169504-169735 bp Feature: gene Location: 169968-170147 bp Feature: gene Location: 170487-172637 bp Ori: AOO35076.1 Feature: domain Description: PRK11114 Location: 170547-172620 bp Feature: domain Description: PRK11114 Location: 170547-172 62 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, InsE (COG2963), GIIM (pfam08388), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB)