myRT

myRT report for GCA_003233675.1_ASM323367v1

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Seq: CP029828.1 Burkholderia sp. JP2-270 plasmid p2, complete sequence (428263 bp)
Overview 1 RT 1: 7616-14453 bp 2 RT 2: 151643-156342 bp 3 RT 3: 165404-169235 bp Neighborhood of RT #1 [7616, 14485] COG3662 GlxA RVT-GII GIIM AcrR PRK07008 Neighborhood of RT #2 [151643, 156344] BON InsE RVT-GII GIIM PHA02517 DUF2471 Neighborhood of RT #3 [165404, 169261] InsE RVT-GII CPT LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 7616-8559 bp Feature: domain Description: COG3662 Location: 7646-8036 bp Feature: domain Description: COG3662 Location: 7646-8036 bp Feature: gene Location: 8858-9721 bp Ori: AWV05390.1 Feature: domain Description: GlxA Location: 9275-9713 bp Feature: domain Description: GlxA Location: 9275-971 3 bp Feature: gene Location: 10163-11581 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10538-11198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0538-1 1 1 98 bp Feature: domain Description: GIIM Note: maturase Location: 11279-11504 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 279-1 1 504 bp Feature: gene Location: 11877-12524 bp Ori: AWV05391.1 Feature: domain Description: AcrR Location: 11907-12330 bp Feature: domain Description: AcrR Location: 1 1 907-1 2330 bp Feature: gene Location: 12839-14485 bp Ori: AWV05392.1 Feature: domain Description: PRK07008 Location: 12842-14453 bp Feature: domain Description: PRK07008 Location: 1 2842-1 4453 bp Feature: gene Location: 151643-151993 bp Ori: AWV05505.1 Feature: domain Description: BON Location: 151793-151979 bp Feature: domain Description: BON Location: 1 51 793-1 51 979 bp Feature: gene Location: 152435-153143 bp Feature: domain Description: InsE Location: 152438-152702 bp Feature: domain Description: InsE Location: 1 52438-1 52702 bp Feature: gene Location: 153824-155341 bp Ori: AWV05506.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154082-154820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54082-1 54820 bp Feature: domain Description: GIIM Note: maturase Location: 154931-155102 bp Feature: domain Description: GIIM Note: maturase Location: 1 54931 -1 551 02 bp Feature: gene Location: 155422-155901 bp Feature: domain Description: PHA02517 Location: 155428-155878 bp Feature: domain Description: PHA0251 7 Location: 1 55428-1 55878 bp Feature: gene Location: 156042-156344 bp Ori: AWV05507.1 Feature: domain Description: DUF2471 Location: 156078-156342 bp Feature: domain Description: DUF2471 Location: 1 56078-1 56342 bp Feature: gene Location: 165404-166143 bp Feature: domain Description: InsE Location: 165425-165737 bp Feature: domain Description: InsE Location: 1 65425-1 65737 bp Feature: gene Location: 166310-166660 bp Feature: gene Location: 166657-166971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166855-166969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66855-1 66969 bp Feature: gene Location: 167031-167597 bp Ori: AWV05518.1 Feature: domain Description: CPT Location: 167055-167535 bp Feature: domain Description: CPT Location: 1 67055-1 67535 bp Feature: gene Location: 167696-169261 bp Ori: AWV05519.1 Feature: domain Description: LZ_Tnp_IS66 Location: 167819-168032 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 6781 9-1 68032 bp Feature: domain Description: zf-IS66 Location: 168056-168188 bp Feature: domain Description: zf-IS66 Location: 1 68056-1 681 88 bp Feature: domain Description: DDE_Tnp_IS66 Location: 168236-169103 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 68236-1 691 03 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 169121-169235 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 691 21 -1 69235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3662 (Uncharacterized conserved protein, DUF2236 family ), GlxA (COG4977), RVT-GII, GIIM (pfam08388), AcrR (COG1309), PRK07008 (long-chain-fatty-acid--CoA ligase; Validated), BON (smart00749), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DUF2471 (pfam10616)
CPT (pfam07931), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: CP029826.1 Burkholderia sp. JP2-270 chromosome 3, complete sequence (1483367 bp)
Overview 1 RT 1: 491199-496750 bp Neighborhood of RT #1 [491199, 496752] MFS_MucK Histone_HNS RVT-Retrons dTDP_HR_like_SDR_e DoxX Feature: gene Location: 491199-492446 bp Ori: AWV04566.1 Feature: domain Description: MFS_MucK Location: 491289-492423 bp Feature: domain Description: MFS_MucK Location: 4912 89-492 42 3 bp Feature: gene Location: 492782-493111 bp Ori: AWV05298.1 Feature: domain Description: Histone_HNS Location: 492803-493040 bp Feature: domain Description: Histone_HNS Location: 492 803-493040 bp Feature: gene Location: 493475-494824 bp Ori: AWV04567.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 493937-494576 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 493937-494576 bp Feature: gene Location: 495225-496190 bp Ori: AWV04568.1 Feature: domain Description: dTDP_HR_like_SDR_e Location: 495264-496149 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 4952 64-496149 bp Feature: gene Location: 496339-496752 bp Ori: AWV04569.1 Feature: domain Description: DoxX Location: 496372-496750 bp Feature: domain Description: DoxX Location: 496372 -496750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, dTDP_HR_like_SDR_e (cd05254), DoxX (pfam07681)