myRT

myRT report for GCA_003254065.1_ASM325406v1

Download annotations/find similar RTs

Seq: CP029974.1 Escherichia coli strain 51008369SK1 plasmid p51008369SK1_A, complete sequence (71718 bp)
Overview 1 RT 1: 14203-18301 bp Neighborhood of RT #1 [14203, 18426] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 14203-14433 bp Feature: gene Location: 14696-14953 bp Feature: gene Location: 15833-17500 bp Ori: AWV13446.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15881-16118 bp Feature: domain Description: RVT_N Location: 1 5881 -1 61 1 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16169-16811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 69-1 681 1 bp Feature: domain Description: GIIM Note: maturase Location: 16862-17096 bp Feature: domain Description: GIIM Note: maturase Location: 1 6862-1 7096 bp Feature: domain Description: HNHc Note: nucleases Location: 17306-17465 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7306-1 7465 bp Feature: gene Location: 17816-18007 bp Feature: gene Location: 18004-18426 bp Ori: AWV13448.1 Feature: domain Description: DUF1380 Location: 18007-18301 bp Feature: domain Description: DUF1 380 Location: 1 8007-1 8301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP029973.1 Escherichia coli strain 51008369SK1 chromosome, complete genome (4848222 bp)
Overview 1 RT 1: 612742-620247 bp 2 RT 2: 631783-635422 bp 3 RT 3: 1969631-1975065 bp 4 RT 4: 3977417-3981700 bp 5 RT 5: 4284167-4287532 bp Neighborhood of RT #1 [612742, 620644] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [631783, 635589] InsE RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #3 [1969631, 1975065] PHA02517 RVT-GII GIIM Neighborhood of RT #4 [3977417, 3981708] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #5 [4284167, 4287929] DUF1016_N PHA02517 RVT-GII GIIM InsE Feature: gene Location: 612742-613014 bp Ori: AWV09394.1 Feature: domain Description: PRK09678 Location: 612751-612907 bp Feature: domain Description: PRK09678 Location: 612 751-612 907 bp Feature: gene Location: 613660-614628 bp Feature: gene Location: 614630-615562 bp Ori: AWV09396.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 614732-615326 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 614732 -61532 6 bp Feature: gene Location: 616017-617158 bp Feature: domain Description: Arm-DNA-bind_3 Location: 616026-616278 bp Feature: domain Description: Arm-DNA-bind_3 Location: 61602 6-6162 78 bp Feature: gene Location: 617161-617634 bp Feature: domain Description: PHA02517 Location: 617167-617632 bp Feature: domain Description: PHA02 517 Location: 617167-617632 bp Feature: gene Location: 617724-619247 bp Ori: AWV09397.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617997-618729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617997-61872 9 bp Feature: domain Description: GIIM Note: maturase Location: 618804-619002 bp Feature: domain Description: GIIM Note: maturase Location: 618804-619002 bp Feature: gene Location: 619541-619912 bp Feature: gene Location: 619905-620644 bp Feature: domain Description: InsE Location: 619908-620247 bp Feature: domain Description: InsE Location: 619908-62 02 47 bp Feature: gene Location: 631783-632500 bp Feature: domain Description: InsE Location: 631822-632071 bp Feature: domain Description: InsE Location: 63182 2 -632 071 bp Feature: gene Location: 632427-632864 bp Feature: gene Location: 633158-634681 bp Ori: AWV09410.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633431-634163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633431-634163 bp Feature: domain Description: GIIM Note: maturase Location: 634238-634436 bp Feature: domain Description: GIIM Note: maturase Location: 6342 38-634436 bp Feature: gene Location: 634762-635249 bp Feature: domain Description: PHA02517 Location: 634765-634936 bp Feature: domain Description: PHA02 517 Location: 634765-634936 bp Feature: gene Location: 635176-635589 bp Ori: AWV09411.1 Feature: domain Description: COG2085 Location: 635275-635422 bp Feature: domain Description: COG2 085 Location: 6352 75-63542 2 bp Feature: gene Location: 1969631-1971541 bp Feature: gene Location: 1971583-1972056 bp Feature: domain Description: PHA02517 Location: 1971589-1972054 bp Feature: domain Description: PHA02 517 Location: 1971589-1972 054 bp Feature: gene Location: 1972146-1973669 bp Ori: AWV10624.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972419-1973151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972 419-1973151 bp Feature: domain Description: GIIM Note: maturase Location: 1973226-1973424 bp Feature: domain Description: GIIM Note: maturase Location: 19732 2 6-197342 4 bp Feature: gene Location: 1973963-1974334 bp Feature: gene Location: 1974327-1975065 bp Feature: gene Location: 3977417-3978322 bp Feature: gene Location: 3978296-3978583 bp Feature: gene Location: 3978808-3979199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3979138-3979198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3979138-3979198 bp Feature: gene Location: 3979375-3979896 bp Ori: AWV12416.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3979381-3979663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3979381-3979663 bp Feature: domain Description: GIIM Note: maturase Location: 3979711-3979891 bp Feature: domain Description: GIIM Note: maturase Location: 3979711-3979891 bp Feature: gene Location: 3980218-3980406 bp Feature: gene Location: 3980479-3981708 bp Ori: AWV12418.1 Feature: domain Description: YesM Location: 3980959-3981700 bp Feature: domain Description: YesM Location: 3980959-3981700 bp Feature: gene Location: 4284167-4284403 bp Feature: domain Description: DUF1016_N Location: 4284224-4284401 bp Feature: domain Description: DUF1016_N Location: 42 842 2 4-42 84401 bp Feature: gene Location: 4284446-4284919 bp Feature: domain Description: PHA02517 Location: 4284452-4284917 bp Feature: domain Description: PHA02 517 Location: 42 84452 -42 84917 bp Feature: gene Location: 4285009-4286532 bp Ori: AWV12705.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4285282-4286014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 852 82 -42 86014 bp Feature: domain Description: GIIM Note: maturase Location: 4286089-4286287 bp Feature: domain Description: GIIM Note: maturase Location: 42 86089-42 862 87 bp Feature: gene Location: 4286826-4287197 bp Feature: gene Location: 4287190-4287929 bp Feature: domain Description: InsE Location: 4287193-4287532 bp Feature: domain Description: InsE Location: 42 87193-42 87532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme ), YesM (COG2972), DUF1016_N (pfam17761)

Seq: CP029975.1 Escherichia coli strain 51008369SK1 plasmid p51008369SK1_B, complete sequence (113340 bp)
Overview 1 RT 1: 44551-47688 bp Neighborhood of RT #1 [44551, 47688] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 44551-44757 bp Feature: gene Location: 44923-44991 bp Feature: gene Location: 45722-47389 bp Ori: AWV13563.1 Gene: ltrA Feature: domain Description: RVT_N Location: 45770-46007 bp Feature: domain Description: RVT_N Location: 45770-46007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46058-46700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46058-46700 bp Feature: domain Description: GIIM Note: maturase Location: 46751-46985 bp Feature: domain Description: GIIM Note: maturase Location: 46751-46985 bp Feature: domain Description: HNHc Note: nucleases Location: 47195-47354 bp Feature: domain Description: HNHc Note: nucleases Location: 47195-473 54 bp Feature: gene Location: 47367-47552 bp Feature: gene Location: 47593-47688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)