myRT

myRT report for GCA_003258705.1_ASM325870v1

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Seq: CP029480.1 Arcticibacterium luteifluviistationis strain SM1504 chromosome, complete genome (5379839 bp)
Overview 1 RT 1: 209925-214281 bp 2 RT 2: 778838-785524 bp 3 RT 3: 1325104-1329135 bp 4 RT 4: 1991818-1996127 bp 5 RT 5: 4874913-4881043 bp Neighborhood of RT #1 [209925, 214436] RVT-GII GIIM UbiG Neighborhood of RT #2 [778838, 785574] Lumazine_bd_2 SnoaL RVT-GII GIIM ArgA YoaP Sialidase_non-viral Neighborhood of RT #3 [1325104, 1329224] Cas2_I_II_III Cas1_I-II-III RVT-Retrons Cas6b_C cas_TM1807_csm5 Neighborhood of RT #4 [1991818, 1996127] GxxExxY DUF1016_N RVT-GII GIIM YybH Neighborhood of RT #5 [4874913, 4881057] Amidohydro_2 Y1_Tnp RVT-GII GIIM Y1_Tnp FGGY_D-XK_2 Feature: gene Location: 209925-210281 bp Feature: gene Location: 210278-210760 bp Feature: gene Location: 210840-212120 bp Ori: AWV96806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211035-211650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 035-21 1 650 bp Feature: domain Description: GIIM Note: maturase Location: 211722-211935 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 722-21 1 935 bp Feature: gene Location: 212614-213423 bp Feature: gene Location: 213801-214436 bp Ori: AWV96808.1 Feature: domain Description: UbiG Location: 213837-214281 bp Feature: domain Description: UbiG Location: 21 3837-21 4281 bp Feature: gene Location: 778838-779734 bp Feature: gene Location: 779807-780727 bp Ori: AWV97236.1 Feature: domain Description: Lumazine_bd_2 Location: 779972-780296 bp Feature: domain Description: Lumazine_bd_2 Location: 779972-780296 bp Feature: domain Description: SnoaL Location: 780350-780707 bp Feature: domain Description: SnoaL Location: 780350-780707 bp Feature: gene Location: 781359-782639 bp Ori: AWV97237.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781554-782169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781 554-7821 69 bp Feature: domain Description: GIIM Note: maturase Location: 782241-782454 bp Feature: domain Description: GIIM Note: maturase Location: 782241 -782454 bp Feature: gene Location: 783267-784013 bp Ori: AWV97238.1 Feature: domain Description: ArgA Location: 783477-783702 bp Feature: domain Description: ArgA Location: 783477-783702 bp Feature: domain Description: YoaP Location: 783873-784002 bp Feature: domain Description: YoaP Location: 783873-784002 bp Feature: gene Location: 784468-785574 bp Ori: AWV97239.1 Feature: domain Description: Sialidase_non-viral Location: 784561-785524 bp Feature: domain Description: Sialidase_non-viral Location: 784561 -785524 bp Feature: gene Location: 1325104-1325397 bp Ori: AWV97674.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 1325107-1325341 bp Feature: domain Description: Cas2_I_II_III Location: 1 3251 07-1 325341 bp Feature: gene Location: 1325394-1326380 bp Ori: AWV97675.1 Gene: cas1 Feature: domain Description: Cas1_I-II-III Location: 1325397-1326363 bp Feature: domain Description: Cas1 _I-II-III Location: 1 325397-1 326363 bp Feature: gene Location: 1326382-1327422 bp Ori: AWV97676.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1326532-1327102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 326532-1 3271 02 bp Feature: gene Location: 1327432-1328106 bp Ori: AWV97677.1 Feature: domain Description: Cas6b_C Location: 1327786-1328101 bp Feature: domain Description: Cas6b_C Location: 1 327786-1 3281 01 bp Feature: gene Location: 1328103-1329224 bp Ori: AWV97678.1 Gene: csm5 Feature: domain Description: cas_TM1807_csm5 Location: 1328148-1329135 bp Feature: domain Description: cas_TM1 807_csm5 Location: 1 3281 48-1 3291 35 bp Feature: gene Location: 1991818-1992210 bp Ori: AWV98176.1 Feature: domain Description: GxxExxY Location: 1991848-1992190 bp Feature: domain Description: GxxExxY Location: 1 991 848-1 9921 90 bp Feature: gene Location: 1992281-1992514 bp Ori: AWV98177.1 Feature: domain Description: DUF1016_N Location: 1992284-1992473 bp Feature: domain Description: DUF1 01 6_N Location: 1 992284-1 992473 bp Feature: gene Location: 1993284-1994564 bp Ori: AWV98178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993479-1994094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 993479-1 994094 bp Feature: domain Description: GIIM Note: maturase Location: 1994166-1994379 bp Feature: domain Description: GIIM Note: maturase Location: 1 9941 66-1 994379 bp Feature: gene Location: 1994654-1995163 bp Ori: AWV98179.1 Feature: domain Description: YybH Location: 1994783-1995149 bp Feature: domain Description: YybH Location: 1 994783-1 9951 49 bp Feature: gene Location: 1995354-1996127 bp Feature: gene Location: 4874913-4876061 bp Ori: AWW00311.1 Feature: domain Description: Amidohydro_2 Location: 4875123-4876032 bp Feature: domain Description: Amidohydro_2 Location: 48751 23-4876032 bp Feature: gene Location: 4876188-4876508 bp Ori: AWW00312.1 Feature: domain Description: Y1_Tnp Location: 4876236-4876407 bp Feature: domain Description: Y1 _Tnp Location: 4876236-4876407 bp Feature: gene Location: 4876549-4877829 bp Ori: AWW00313.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4876744-4877359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4876744-4877359 bp Feature: domain Description: GIIM Note: maturase Location: 4877431-4877644 bp Feature: domain Description: GIIM Note: maturase Location: 4877431 -4877644 bp Feature: gene Location: 4878315-4878491 bp Feature: domain Description: Y1_Tnp Location: 4878333-4878492 bp Feature: domain Description: Y1 _Tnp Location: 4878333-4878492 bp Feature: gene Location: 4879573-4881057 bp Ori: AWW00314.1 Feature: domain Description: FGGY_D-XK_2 Location: 4879579-4881043 bp Feature: domain Description: FGGY_D-XK_2 Location: 4879579-4881 043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), UbiG (TIGR01983), Lumazine_bd_2 (pfam12893), SnoaL (pfam07366), ArgA (COG1246), YoaP (pfam14268), Sialidase_non-viral (cd15482), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)
RVT-Retrons, Cas6b_C, cas_TM1807_csm5 (TIGR01899), GxxExxY (TIGR04256), DUF1016_N (pfam17761), YybH (COG4319), Amidohydro_2 (pfam04909), Y1_Tnp (pfam01797), FGGY_D-XK_2 (cd07810)