myRT

myRT report for GCA_003260185.2_ASM326018v2

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Seq: CP037900.1 Cupriavidus metallidurans strain BS1 chromosome c1, complete sequence (3938349 bp)
Overview 1 RT 1: 1287984-1290776 bp 2 RT 2: 2278023-2284935 bp 3 RT 3: 2677490-2683223 bp 4 RT 4: 3201108-3210830 bp 5 RT 5: 3757722-3761094 bp Neighborhood of RT #1 [1287984, 1290790] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [2278023, 2284943] PRK06349 PRK09265 RVT_N RVT-GII GIIM HNHc Xcc1710_like Bcp Neighborhood of RT #3 [2677490, 2683223] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG1000 SF2_C_SNF Neighborhood of RT #4 [3201108, 3210862] CitB BaeS PRK15347 RVT_N RVT-GII GIIM HNHc PRK05627 ileS Neighborhood of RT #5 [3757722, 3761094] HTH_XRE RVT-Retrons AlpA Feature: gene Location: 1287984-1288118 bp Feature: gene Location: 1288325-1288642 bp Feature: gene Location: 1288639-1289829 bp Ori: QBP09341.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1288891-1289578 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 288891 -1 289578 bp Feature: gene Location: 1290050-1290406 bp Ori: QBP09342.1 Feature: domain Description: Avd_like Location: 1290077-1290383 bp Feature: domain Description: Avd_like Location: 1 290077-1 290383 bp Feature: gene Location: 1290425-1290790 bp Ori: QBP11630.1 Feature: domain Description: DUF1566 Location: 1290551-1290776 bp Feature: domain Description: DUF1 566 Location: 1 290551 -1 290776 bp Feature: gene Location: 2278023-2279333 bp Ori: QBP10175.1 Feature: domain Description: PRK06349 Location: 2278026-2279322 bp Feature: domain Description: PRK06349 Location: 2278026-2279322 bp Feature: gene Location: 2279384-2280613 bp Ori: QBP10176.1 Feature: domain Description: PRK09265 Location: 2279390-2280596 bp Feature: domain Description: PRK09265 Location: 2279390-2280596 bp Feature: gene Location: 2280817-2282541 bp Ori: QBP10177.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2280874-2281117 bp Feature: domain Description: RVT_N Location: 2280874-2281 1 1 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2281162-2281810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2281 1 62-2281 81 0 bp Feature: domain Description: GIIM Note: maturase Location: 2281864-2282095 bp Feature: domain Description: GIIM Note: maturase Location: 2281 864-2282095 bp Feature: domain Description: HNHc Note: nucleases Location: 2282320-2282479 bp Feature: domain Description: HNHc Note: nucleases Location: 2282320-2282479 bp Feature: gene Location: 2283888-2284268 bp Ori: QBP10178.1 Feature: domain Description: Xcc1710_like Location: 2283927-2284251 bp Feature: domain Description: Xcc1 71 0_like Location: 2283927-2284251 bp Feature: gene Location: 2284482-2284943 bp Ori: QBP10179.1 Feature: domain Description: Bcp Location: 2284488-2284935 bp Feature: domain Description: Bcp Location: 2284488-2284935 bp Feature: gene Location: 2677490-2677795 bp Feature: gene Location: 2677931-2678965 bp Feature: domain Description: DEXHc_Snf Location: 2678150-2678411 bp Feature: domain Description: DEXHc_Snf Location: 26781 50-267841 1 bp Feature: gene Location: 2679583-2681301 bp Ori: QBP10506.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2679640-2679877 bp Feature: domain Description: RVT_N Location: 2679640-2679877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2679928-2680579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2679928-2680579 bp Feature: domain Description: GIIM Note: maturase Location: 2680633-2680864 bp Feature: domain Description: GIIM Note: maturase Location: 2680633-2680864 bp Feature: domain Description: HNHc Note: nucleases Location: 2681098-2681254 bp Feature: domain Description: HNHc Note: nucleases Location: 2681 098-2681 254 bp Feature: gene Location: 2681384-2682628 bp Feature: domain Description: KOG1000 Location: 2681396-2681519 bp Feature: domain Description: KOG1 000 Location: 2681 396-2681 51 9 bp Feature: domain Description: SF2_C_SNF Location: 2682086-2682464 bp Feature: domain Description: SF2_C_SNF Location: 2682086-2682464 bp Feature: gene Location: 2682741-2683223 bp Feature: gene Location: 3201108-3201767 bp Ori: QBP10955.1 Feature: domain Description: CitB Location: 3201132-3201753 bp Feature: domain Description: CitB Location: 3201 1 32-3201 753 bp Feature: gene Location: 3201833-3203623 bp Ori: QBP11727.1 Feature: domain Description: BaeS Location: 3202067-3203183 bp Feature: domain Description: BaeS Location: 3202067-32031 83 bp Feature: domain Description: PRK15347 Location: 3203267-3203591 bp Feature: domain Description: PRK1 5347 Location: 3203267-3203591 bp Feature: gene Location: 3205056-3206756 bp Ori: QBP10956.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3205113-3205356 bp Feature: domain Description: RVT_N Location: 32051 1 3-3205356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3205401-3206049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3205401 -3206049 bp Feature: domain Description: GIIM Note: maturase Location: 3206106-3206334 bp Feature: domain Description: GIIM Note: maturase Location: 32061 06-3206334 bp Feature: domain Description: HNHc Note: nucleases Location: 3206559-3206718 bp Feature: domain Description: HNHc Note: nucleases Location: 3206559-320671 8 bp Feature: gene Location: 3206880-3207863 bp Ori: QBP10957.1 Feature: domain Description: PRK05627 Location: 3206889-3207801 bp Feature: domain Description: PRK05627 Location: 3206889-3207801 bp Feature: gene Location: 3207983-3210862 bp Ori: QBP10958.1 Gene: ileS Feature: domain Description: ileS Location: 3208016-3210830 bp Feature: domain Description: ileS Location: 320801 6-321 0830 bp Feature: gene Location: 3757722-3758147 bp Feature: gene Location: 3758373-3758627 bp Ori: QBP11426.1 Feature: domain Description: HTH_XRE Location: 3758421-3758580 bp Feature: domain Description: HTH_XRE Location: 3758421 -3758580 bp Feature: gene Location: 3758689-3760068 bp Ori: QBP11427.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3759298-3759604 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3759298-3759604 bp Feature: gene Location: 3760087-3760350 bp Ori: QBP11428.1 Feature: domain Description: AlpA Location: 3760111-3760267 bp Feature: domain Description: AlpA Location: 37601 1 1 -3760267 bp Feature: gene Location: 3760408-3761094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), PRK06349 (homoserine dehydrogenase; Provisional), PRK09265 (aminotransferase AlaT; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Xcc1710_like (cd05560)
Bcp (COG1225), DEXHc_Snf (cd17919), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), SF2_C_SNF (cd18793), CitB (TIGR02484), BaeS (COG0642), PRK15347 (two component system sensor kinase), PRK05627 (bifunctional riboflavin kinase/FAD synthetase), ileS (TIGR00392), HTH_XRE (smart00530)
RVT-Retrons, AlpA (COG3311)

Seq: CP037901.1 Cupriavidus metallidurans strain BS1 chromosome c2, complete sequence (2861767 bp)
Overview 1 RT 1: 2501216-2511070 bp Neighborhood of RT #1 [2501216, 2511141] tauD MalT RVT_N RVT-GII GIIM HNH DUF3701 Phage_int_SAM_1 Spo0J Feature: gene Location: 2501216-2502103 bp Ori: QBP13758.1 Feature: domain Description: tauD Location: 2501264-2502098 bp Feature: domain Description: tauD Location: 2 5012 64-2 502 098 bp Feature: gene Location: 2502170-2504914 bp Ori: QBP13759.1 Feature: domain Description: MalT Location: 2502227-2504909 bp Feature: domain Description: MalT Location: 2 502 2 2 7-2 504909 bp Feature: gene Location: 2505999-2507699 bp Ori: QBP13760.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2506053-2506293 bp Feature: domain Description: RVT_N Location: 2 506053-2 5062 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506341-2506977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 506341-2 506977 bp Feature: domain Description: GIIM Note: maturase Location: 2507028-2507262 bp Feature: domain Description: GIIM Note: maturase Location: 2 50702 8-2 5072 62 bp Feature: domain Description: HNH Note: nucleases Location: 2507520-2507643 bp Feature: domain Description: HNH Note: nucleases Location: 2 50752 0-2 507643 bp Feature: gene Location: 2508477-2510057 bp Ori: QBP13761.1 Feature: domain Description: DUF3701 Location: 2508780-2509029 bp Feature: domain Description: DUF3701 Location: 2 508780-2 50902 9 bp Feature: domain Description: Phage_int_SAM_1 Location: 2509191-2509317 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 509191-2 509317 bp Feature: gene Location: 2510125-2511141 bp Ori: QBP13762.1 Feature: domain Description: Spo0J Location: 2510335-2511070 bp Feature: domain Description: Spo0J Location: 2 510335-2 511070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tauD (PRK09553), MalT (COG2909), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF3701 (pfam12482), Phage_int_SAM_1 (pfam02899), Spo0J (COG1475)