myRT

myRT report for GCA_003267985.1_ASM326798v1

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Seq: CP022613.1 Klebsiella pneumoniae strain CDC 0106 plasmid unitig_2, complete sequence (102915 bp)
Overview 1 RT 1: 27537-32531 bp Neighborhood of RT #1 [27537, 32533] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 27537-28808 bp Ori: AWX31484.1 Gene: dinB1_4 Feature: domain Description: umuC Location: 27540-28803 bp Feature: domain Description: umuC Location: 27540-28803 bp Feature: gene Location: 28808-29233 bp Ori: AWX31485.1 Gene: lexA_5 Feature: domain Description: PRK10276 Location: 28811-29219 bp Feature: domain Description: PRK1 0276 Location: 2881 1 -2921 9 bp Feature: gene Location: 29636-31123 bp Ori: AWX31486.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30041-30731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30041 -30731 bp Feature: gene Location: 31357-31587 bp Feature: gene Location: 32108-32533 bp Ori: AWX31488.1 Gene: klcA Feature: domain Description: Antirestrict Location: 32243-32531 bp Feature: domain Description: Antirestrict Location: 32243-32531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: CP022611.1 Klebsiella pneumoniae CDC 0106, complete genome (5356693 bp)
Overview 1 RT 1: 1077231-1082594 bp 2 RT 2: 3961476-3970105 bp 3 RT 3: 5020338-5026809 bp 4 RT 4: 5152477-5155435 bp Neighborhood of RT #1 [1077231, 1082650] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #2 [3961476, 3970110] FimC FimD RVT-UG4 PRK09692 YqgA Neighborhood of RT #3 [5020338, 5026823] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [5152477, 5155629] RVT-GII PRK10276 Feature: gene Location: 1077231-1078496 bp Ori: AWX27190.1 Gene: dinB1_1 Feature: domain Description: umuC Location: 1077234-1078494 bp Feature: domain Description: umuC Location: 10772 34-1078494 bp Feature: gene Location: 1078499-1078918 bp Ori: AWX27191.1 Gene: lexA_1 Feature: domain Description: PRK10276 Location: 1078502-1078913 bp Feature: domain Description: PRK102 76 Location: 1078502 -1078913 bp Feature: gene Location: 1078996-1080483 bp Ori: AWX27192.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1079401-1080091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1079401-1080091 bp Feature: gene Location: 1081098-1081340 bp Ori: AWX27193.1 Gene: dinI_1 Feature: domain Description: DinI Location: 1081149-1081329 bp Feature: domain Description: DinI Location: 1081149-108132 9 bp Feature: gene Location: 1081511-1082650 bp Ori: AWX27194.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1081694-1082594 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1081694-1082 594 bp Feature: gene Location: 3961476-3962240 bp Ori: AWX29809.1 Gene: fimC_2 Feature: domain Description: FimC Location: 3961521-3962223 bp Feature: domain Description: FimC Location: 396152 1-3962 2 2 3 bp Feature: gene Location: 3962287-3964854 bp Ori: AWX29810.1 Gene: yraJ Feature: domain Description: FimD Location: 3962329-3964756 bp Feature: domain Description: FimD Location: 3962 32 9-3964756 bp Feature: gene Location: 3964877-3966958 bp Ori: AWX29811.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3965288-3965732 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 39652 88-3965732 bp Feature: gene Location: 3967716-3968579 bp Ori: AWX29812.1 Gene: intA_2 Feature: domain Description: PRK09692 Location: 3967740-3968577 bp Feature: domain Description: PRK09692 Location: 3967740-3968577 bp Feature: gene Location: 3969397-3970110 bp Ori: AWX29813.1 Gene: ydfK_2 Feature: domain Description: YqgA Location: 3969403-3970105 bp Feature: domain Description: YqgA Location: 3969403-3970105 bp Feature: gene Location: 5020338-5021762 bp Ori: AWX30780.1 Gene: sbcB Feature: domain Description: SbcB Location: 5020344-5021760 bp Feature: domain Description: SbcB Location: 502 0344-502 1760 bp Feature: gene Location: 5021943-5023106 bp Ori: AWX30781.1 Gene: dacD Feature: domain Description: dacD Location: 5021946-5023101 bp Feature: domain Description: dacD Location: 502 1946-502 3101 bp Feature: gene Location: 5023624-5025111 bp Ori: AWX30782.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5024029-5024719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 402 9-502 4719 bp Feature: gene Location: 5025193-5025666 bp Ori: AWX30783.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 5025196-5025655 bp Feature: domain Description: PRK10016 Location: 502 5196-502 5655 bp Feature: gene Location: 5025765-5026823 bp Ori: AWX30784.1 Gene: yeeA Feature: domain Description: YccC Location: 5025771-5026809 bp Feature: domain Description: YccC Location: 502 5771-502 6809 bp Feature: gene Location: 5152477-5152806 bp Feature: gene Location: 5152890-5153105 bp Feature: gene Location: 5153508-5154995 bp Ori: AWX30930.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5153913-5154603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5153913-5154603 bp Feature: gene Location: 5155073-5155312 bp Feature: gene Location: 5155312-5155629 bp Ori: AWX30932.1 Feature: domain Description: PRK10276 Location: 5155318-5155435 bp Feature: domain Description: PRK102 76 Location: 5155318-5155435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), FimC (COG3121), FimD (COG3188), RVT-UG4, PRK09692 (Integrase; provisional), YqgA (COG1811)
SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: CP022612.1 Klebsiella pneumoniae strain CDC 0106 plasmid unitig_1, complete sequence (334957 bp)
Overview 1 RT 1: 102696-107709 bp 2 RT 2: 162455-168388 bp Neighborhood of RT #1 [102696, 107709] INT_Cre_C RVT-GII HHA Neighborhood of RT #2 [162455, 168396] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 102696-103013 bp Feature: gene Location: 103079-104215 bp Ori: AWX31216.1 Feature: domain Description: INT_Cre_C Location: 103502-104156 bp Feature: domain Description: INT_Cre_C Location: 103 502-104156 bp Feature: gene Location: 104301-105788 bp Ori: AWX31217.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104706-105396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104706-1053 96 bp Feature: gene Location: 106302-106556 bp Ori: AWX31218.1 Gene: hha_2 Feature: domain Description: HHA Location: 106353-106536 bp Feature: domain Description: HHA Location: 1063 53 -10653 6 bp Feature: gene Location: 106642-107709 bp Feature: gene Location: 162455-162886 bp Feature: gene Location: 163366-164331 bp Ori: AWX31277.1 Gene: traC_2 Feature: domain Description: ArdC Location: 163492-164326 bp Feature: domain Description: ArdC Location: 163 492-1643 26 bp Feature: gene Location: 164801-166288 bp Ori: AWX31278.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165206-165896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165206-165896 bp Feature: gene Location: 166694-167125 bp Ori: AWX31279.1 Gene: lexA_3 Feature: domain Description: PRK10276 Location: 166745-167108 bp Feature: domain Description: PRK10276 Location: 166745-167108 bp Feature: gene Location: 167125-168396 bp Ori: AWX31280.1 Gene: dinB1_2 Feature: domain Description: umuC Location: 167128-168388 bp Feature: domain Description: umuC Location: 167128-1683 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321), ArdC (COG4227), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)