myRT

myRT report for GCA_003288035.1_ASM328803v1

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Seq: CP021773.1 Streptococcus agalactiae strain B105 chromosome, complete genome (2273717 bp)
Overview 1 RT 1: 669393-679579 bp 2 RT 2: 723431-734297 bp 3 RT 3: 1097829-1104705 bp 4 RT 4: 1266058-1272052 bp 5 RT 5: 1464245-1474414 bp Neighborhood of RT #1 [669393, 679579] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Neighborhood of RT #2 [723431, 734365] UPF0236 Peptidases_S8_C5a_Peptidase fn3_5 CHU_C RVT-GII GIIM AdcA strep_his_triad strep_his_triad strep_his_triad Neighborhood of RT #3 [1097829, 1104725] MurE COG3442 RVT-GII GIIM lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #4 [1266058, 1272066] YraQ YcgQ RVT-GII PRK10416 Cof Neighborhood of RT #5 [1464245, 1474414] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 669393-669944 bp Feature: gene Location: 669994-675453 bp Ori: AWZ35917.1 Feature: domain Description: N6_Mtase Location: 671998-672592 bp Feature: domain Description: N6_Mtase Location: 671 998-672592 bp Feature: domain Description: COG4646 Location: 673183-675310 bp Feature: domain Description: COG4646 Location: 6731 83-67531 0 bp Feature: gene Location: 675951-677729 bp Ori: AWZ37366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676212-677004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67621 2-677004 bp Feature: domain Description: Intron_maturas2 Location: 677109-677340 bp Feature: domain Description: Intron_maturas2 Location: 6771 09-677340 bp Feature: domain Description: HNHc Note: nucleases Location: 677505-677691 bp Feature: domain Description: HNHc Note: nucleases Location: 677505-677691 bp Feature: gene Location: 677867-679210 bp Ori: AWZ35918.1 Feature: domain Description: KOG1000 Location: 678146-678464 bp Feature: domain Description: KOG1 000 Location: 6781 46-678464 bp Feature: gene Location: 679280-679579 bp Feature: gene Location: 723431-724765 bp Ori: AWZ35963.1 Feature: domain Description: UPF0236 Location: 723461-724589 bp Feature: domain Description: UPF0236 Location: 723461 -724589 bp Feature: gene Location: 725419-728871 bp Ori: AWZ35964.1 Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 725764-727162 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 725764-7271 62 bp Feature: domain Description: fn3_5 Location: 727210-727540 bp Feature: domain Description: fn3_5 Location: 72721 0-727540 bp Feature: domain Description: CHU_C Location: 727876-728170 bp Feature: domain Description: CHU_C Location: 727876-7281 70 bp Feature: gene Location: 729453-730730 bp Ori: AWZ37371.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729657-730272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729657-730272 bp Feature: domain Description: GIIM Note: maturase Location: 730326-730542 bp Feature: domain Description: GIIM Note: maturase Location: 730326-730542 bp Feature: gene Location: 730964-731884 bp Ori: AWZ35965.1 Feature: domain Description: AdcA Location: 731057-731882 bp Feature: domain Description: AdcA Location: 731 057-731 882 bp Feature: gene Location: 731897-734365 bp Ori: AWZ35966.1 Feature: domain Description: strep_his_triad Location: 731903-733016 bp Feature: domain Description: strep_his_triad Location: 731 903-73301 6 bp Feature: domain Description: strep_his_triad Location: 733154-733688 bp Feature: domain Description: strep_his_triad Location: 7331 54-733688 bp Feature: domain Description: strep_his_triad Location: 733853-734297 bp Feature: domain Description: strep_his_triad Location: 733853-734297 bp Feature: gene Location: 1097829-1099172 bp Ori: AWZ36287.1 Feature: domain Description: MurE Location: 1097862-1099167 bp Feature: domain Description: MurE Location: 1 097862-1 0991 67 bp Feature: gene Location: 1099172-1099957 bp Ori: AWZ36288.1 Feature: domain Description: COG3442 Location: 1099220-1099946 bp Feature: domain Description: COG3442 Location: 1 099220-1 099946 bp Feature: gene Location: 1100023-1101300 bp Ori: AWZ37381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1100227-1100842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 00227-1 1 00842 bp Feature: domain Description: GIIM Note: maturase Location: 1100896-1101112 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 00896-1 1 01 1 1 2 bp Feature: gene Location: 1101881-1102870 bp Ori: AWZ36289.1 Feature: domain Description: lipoyltrans Location: 1101896-1102844 bp Feature: domain Description: lipoyltrans Location: 1 1 01 896-1 1 02844 bp Feature: gene Location: 1102968-1104725 bp Ori: AWZ36290.1 Gene: lpdA Feature: domain Description: PRK11856 Location: 1102971-1103319 bp Feature: domain Description: PRK1 1 856 Location: 1 1 02971 -1 1 0331 9 bp Feature: domain Description: lipoamide_DH Location: 1103346-1104705 bp Feature: domain Description: lipoamide_DH Location: 1 1 03346-1 1 04705 bp Feature: gene Location: 1266058-1266960 bp Ori: AWZ36435.1 Feature: domain Description: YraQ Location: 1266061-1266958 bp Feature: domain Description: YraQ Location: 1 266061 -1 266958 bp Feature: gene Location: 1266960-1267772 bp Ori: AWZ36436.1 Feature: domain Description: YcgQ Location: 1266963-1267770 bp Feature: domain Description: YcgQ Location: 1 266963-1 267770 bp Feature: gene Location: 1267838-1269114 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1268042-1268657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 268042-1 268657 bp Feature: gene Location: 1269665-1271242 bp Ori: AWZ36437.1 Feature: domain Description: PRK10416 Location: 1269914-1271231 bp Feature: domain Description: PRK1 041 6 Location: 1 26991 4-1 271 231 bp Feature: gene Location: 1271242-1272066 bp Ori: AWZ36438.1 Feature: domain Description: Cof Location: 1271254-1272052 bp Feature: domain Description: Cof Location: 1 271 254-1 272052 bp Feature: gene Location: 1464245-1464544 bp Feature: gene Location: 1464615-1465958 bp Ori: AWZ36607.1 Feature: domain Description: KOG1000 Location: 1464894-1465209 bp Feature: domain Description: KOG1 000 Location: 1 464894-1 465209 bp Feature: gene Location: 1466096-1467874 bp Ori: AWZ37401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1466357-1467149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 466357-1 4671 49 bp Feature: domain Description: Intron_maturas2 Location: 1467254-1467485 bp Feature: domain Description: Intron_maturas2 Location: 1 467254-1 467485 bp Feature: domain Description: HNHc Note: nucleases Location: 1467650-1467836 bp Feature: domain Description: HNHc Note: nucleases Location: 1 467650-1 467836 bp Feature: gene Location: 1468372-1473813 bp Ori: AWZ36608.1 Feature: domain Description: N6_Mtase Location: 1470364-1470955 bp Feature: domain Description: N6_Mtase Location: 1 470364-1 470955 bp Feature: domain Description: COG4646 Location: 1471546-1473670 bp Feature: domain Description: COG4646 Location: 1 471 546-1 473670 bp Feature: gene Location: 1473863-1474414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), UPF0236 (pfam06782), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585)
GIIM (pfam08388), AdcA (cd01017), strep_his_triad (TIGR01363), MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), YraQ (COG0701), YcgQ (COG3689)
PRK10416 (signal recognition particle-docking protein FtsY; Provisional), Cof (COG0561)