myRT

myRT report for GCA_003288355.1_ASM328835v1

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Seq: CP030328.1 Pseudomonas aeruginosa strain AR_455 chromosome, complete genome (6540996 bp)
Overview 1 RT 1: 2034609-2048586 bp Neighborhood of RT #1 [2034609, 2048588] YbjD YbjD INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 2034609-2036675 bp Ori: AWZ86516.1 Feature: domain Description: YbjD Location: 2034612-2034786 bp Feature: domain Description: YbjD Location: 203461 2-2034786 bp Feature: domain Description: YbjD Location: 2035239-2036208 bp Feature: domain Description: YbjD Location: 2035239-2036208 bp Feature: gene Location: 2038407-2038892 bp Ori: AWZ87166.1 Feature: domain Description: INT_Rci_Hp1_C Location: 2038416-2038842 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 203841 6-2038842 bp Feature: gene Location: 2040125-2041810 bp Ori: AWZ85659.1 Feature: domain Description: RVT_N Location: 2040182-2040422 bp Feature: domain Description: RVT_N Location: 20401 82-2040422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040470-2041106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040470-2041 1 06 bp Feature: domain Description: GIIM Note: maturase Location: 2041160-2041391 bp Feature: domain Description: GIIM Note: maturase Location: 2041 1 60-2041 391 bp Feature: domain Description: HNH Note: nucleases Location: 2041643-2041781 bp Feature: domain Description: HNH Note: nucleases Location: 2041 643-2041 781 bp Feature: gene Location: 2042891-2046628 bp Ori: AWZ87216.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 2042999-2043656 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2042999-2043656 bp Feature: domain Description: PRK09776 Location: 2043869-2044340 bp Feature: domain Description: PRK09776 Location: 2043869-2044340 bp Feature: domain Description: PAS Location: 2044385-2044922 bp Feature: domain Description: PAS Location: 2044385-2044922 bp Feature: domain Description: PRK10060 Location: 2044931-2046578 bp Feature: domain Description: PRK1 0060 Location: 2044931 -2046578 bp Feature: gene Location: 2046735-2048588 bp Ori: AWZ87288.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 2046747-2048586 bp Feature: domain Description: PRK05658 Location: 2046747-2048586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)