myRT

myRT report for GCA_003316915.1_ASM331691v1

Download annotations/find similar RTs

Seq: CP029614.1 Lactobacillus johnsonii strain Byun-jo-01 chromosome, complete genome (1959519 bp)
Overview 1 RT 1: 132-7227 bp 2 RT 2: 396490-403453 bp 3 RT 3: 610201-616302 bp 4 RT 4: 629738-634255 bp 5 RT 5: 779213-790962 bp 6 RT 6: 797812-803877 bp 7 RT 7: 966730-977104 bp 8 RT 8: 1018399-1023862 bp 9 RT 9: 1245503-1249988 bp 10 RT 10: 1663682-1671049 bp 11 RT 11: 1846097-1852592 bp Neighborhood of RT #1 [132, 7232] OmpR BaeS RVT-GII MdoB VanZ Neighborhood of RT #2 [396490, 403453] MdlB HTH_19 RGG_Cterm RVT-GII GIIM Neighborhood of RT #3 [610201, 616319] wecB RVT-GII GIIM CelB SrmB Neighborhood of RT #4 [629738, 634356] Dps YfcC RVT-GII GIIM Acetyltransf_7 Neighborhood of RT #5 [779213, 791015] MscS PRK00180 RVT-GII GIIM MBG MBG MBG MBG MBG MBG MBG MBG MBG MBG MBG MBG Mub_B2 MucBP Mub_B2 MucBP Mub_B2 MucBP Gram_pos_anchor COG3464 Neighborhood of RT #6 [797812, 803882] PRK00865 DUF2507 RVT-GII GIIM thioredoxin PRK00409 Neighborhood of RT #7 [966730, 977292] rpsL PulO RVT-GII GIIM PRK00566 rpoB Neighborhood of RT #8 [1018399, 1023870] PepD NfsA_FRP RVT-GII GIIM FMR2 HxlR Neighborhood of RT #9 [1245503, 1249988] COG3464 2A0307_GadC RVT-GII GIIM Neighborhood of RT #10 [1663682, 1671234] AnsP PRK13805 RVT-GII GIIM YurZ Neighborhood of RT #11 [1846097, 1852597] PtsA COG3464 RVT-GII GIIM spxA PRK02315 Feature: gene Location: 132-848 bp Ori: AYN48583.1 Gene: srrA_1 Feature: domain Description: OmpR Location: 141-834 bp Feature: domain Description: OmpR Location: 1 41 -834 bp Feature: gene Location: 1558-2304 bp Ori: AYN48584.1 Gene: phoR Feature: domain Description: BaeS Location: 1597-2269 bp Feature: domain Description: BaeS Location: 1 597-2269 bp Feature: gene Location: 2905-3657 bp Ori: AYN48585.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3106-3631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 06-3631 bp Feature: gene Location: 4278-6470 bp Ori: AYN48586.1 Gene: ltaS1_1 Feature: domain Description: MdoB Location: 4317-6213 bp Feature: domain Description: MdoB Location: 431 7-621 3 bp Feature: gene Location: 6630-7232 bp Ori: AYN48587.1 Feature: domain Description: VanZ Location: 6747-7227 bp Feature: domain Description: VanZ Location: 6747-7227 bp Feature: gene Location: 396490-398109 bp Ori: AYN48944.1 Gene: lagD_1 Feature: domain Description: MdlB Location: 396553-398026 bp Feature: domain Description: MdlB Location: 396553-398026 bp Feature: gene Location: 398478-399293 bp Ori: AYN48945.1 Feature: domain Description: HTH_19 Location: 398499-398670 bp Feature: domain Description: HTH_1 9 Location: 398499-398670 bp Feature: domain Description: RGG_Cterm Location: 398676-399285 bp Feature: domain Description: RGG_Cterm Location: 398676-399285 bp Feature: gene Location: 399829-401124 bp Ori: AYN48946.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400030-400648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400030-400648 bp Feature: domain Description: GIIM Note: maturase Location: 400702-400912 bp Feature: domain Description: GIIM Note: maturase Location: 400702-40091 2 bp Feature: gene Location: 401795-402631 bp Feature: gene Location: 402638-403453 bp Feature: gene Location: 610201-611343 bp Ori: AYN49151.1 Gene: mnaA Feature: domain Description: wecB Location: 610213-611302 bp Feature: domain Description: wecB Location: 61 021 3-61 1 302 bp Feature: gene Location: 611457-611642 bp Feature: gene Location: 611732-613027 bp Ori: AYN49153.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611933-612551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 933-61 2551 bp Feature: domain Description: GIIM Note: maturase Location: 612605-612815 bp Feature: domain Description: GIIM Note: maturase Location: 61 2605-61 281 5 bp Feature: gene Location: 613759-615090 bp Ori: AYN49154.1 Gene: gmuC_1 Feature: domain Description: CelB Location: 613762-615064 bp Feature: domain Description: CelB Location: 61 3762-61 5064 bp Feature: gene Location: 615090-616319 bp Ori: AYN49155.1 Gene: yfmL Feature: domain Description: SrmB Location: 615102-616302 bp Feature: domain Description: SrmB Location: 61 51 02-61 6302 bp Feature: gene Location: 629738-630205 bp Ori: AYN49169.1 Gene: dps Feature: domain Description: Dps Location: 629753-630179 bp Feature: domain Description: Dps Location: 629753-6301 79 bp Feature: gene Location: 630289-631827 bp Ori: AYN49170.1 Feature: domain Description: YfcC Location: 630304-631816 bp Feature: domain Description: YfcC Location: 630304-631 81 6 bp Feature: gene Location: 632010-633305 bp Ori: AYN49171.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632211-632829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63221 1 -632829 bp Feature: domain Description: GIIM Note: maturase Location: 632883-633093 bp Feature: domain Description: GIIM Note: maturase Location: 632883-633093 bp Feature: gene Location: 633747-633866 bp Feature: gene Location: 633910-634356 bp Ori: AYN49173.1 Gene: yvbK Feature: domain Description: Acetyltransf_7 Location: 634009-634255 bp Feature: domain Description: Acetyltransf_7 Location: 634009-634255 bp Feature: gene Location: 779213-780109 bp Ori: AYN49312.1 Gene: ykuT Feature: domain Description: MscS Location: 779312-780068 bp Feature: domain Description: MscS Location: 77931 2-780068 bp Feature: gene Location: 780155-781333 bp Ori: AYN49313.1 Gene: ackA_1 Feature: domain Description: PRK00180 Location: 780161-781328 bp Feature: domain Description: PRK001 80 Location: 7801 61 -781 328 bp Feature: gene Location: 781516-782811 bp Ori: AYN49314.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781717-782335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781 71 7-782335 bp Feature: domain Description: GIIM Note: maturase Location: 782389-782599 bp Feature: domain Description: GIIM Note: maturase Location: 782389-782599 bp Feature: gene Location: 783448-789402 bp Ori: AYN49315.1 Feature: domain Description: MBG Location: 783487-783646 bp Feature: domain Description: MBG Location: 783487-783646 bp Feature: domain Description: MBG Location: 783790-784039 bp Feature: domain Description: MBG Location: 783790-784039 bp Feature: domain Description: MBG Location: 784129-784357 bp Feature: domain Description: MBG Location: 7841 29-784357 bp Feature: domain Description: MBG Location: 784393-784669 bp Feature: domain Description: MBG Location: 784393-784669 bp Feature: domain Description: MBG Location: 784717-785002 bp Feature: domain Description: MBG Location: 78471 7-785002 bp Feature: domain Description: MBG Location: 785044-785320 bp Feature: domain Description: MBG Location: 785044-785320 bp Feature: domain Description: MBG Location: 785359-785656 bp Feature: domain Description: MBG Location: 785359-785656 bp Feature: domain Description: MBG Location: 785701-785986 bp Feature: domain Description: MBG Location: 785701 -785986 bp Feature: domain Description: MBG Location: 786025-786295 bp Feature: domain Description: MBG Location: 786025-786295 bp Feature: domain Description: MBG Location: 786337-786595 bp Feature: domain Description: MBG Location: 786337-786595 bp Feature: domain Description: MBG Location: 786637-786862 bp Feature: domain Description: MBG Location: 786637-786862 bp Feature: domain Description: MBG Location: 786907-787141 bp Feature: domain Description: MBG Location: 786907-7871 41 bp Feature: domain Description: Mub_B2 Location: 787438-787624 bp Feature: domain Description: Mub_B2 Location: 787438-787624 bp Feature: domain Description: MucBP Location: 787714-787867 bp Feature: domain Description: MucBP Location: 78771 4-787867 bp Feature: domain Description: Mub_B2 Location: 787996-788182 bp Feature: domain Description: Mub_B2 Location: 787996-7881 82 bp Feature: domain Description: MucBP Location: 788272-788425 bp Feature: domain Description: MucBP Location: 788272-788425 bp Feature: domain Description: Mub_B2 Location: 788569-788761 bp Feature: domain Description: Mub_B2 Location: 788569-788761 bp Feature: domain Description: MucBP Location: 788863-789019 bp Feature: domain Description: MucBP Location: 788863-78901 9 bp Feature: domain Description: Gram_pos_anchor Location: 789292-789394 bp Feature: domain Description: Gram_pos_anchor Location: 789292-789394 bp Feature: gene Location: 789738-791015 bp Ori: AYN49316.1 Feature: domain Description: COG3464 Location: 789777-790962 bp Feature: domain Description: COG3464 Location: 789777-790962 bp Feature: gene Location: 797812-798612 bp Ori: AYN49319.1 Gene: murI Feature: domain Description: PRK00865 Location: 797818-798571 bp Feature: domain Description: PRK00865 Location: 79781 8-798571 bp Feature: gene Location: 798709-799104 bp Ori: AYN49320.1 Feature: domain Description: DUF2507 Location: 798736-799096 bp Feature: domain Description: DUF2507 Location: 798736-799096 bp Feature: gene Location: 799217-800512 bp Ori: AYN49321.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799418-800036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79941 8-800036 bp Feature: domain Description: GIIM Note: maturase Location: 800090-800300 bp Feature: domain Description: GIIM Note: maturase Location: 800090-800300 bp Feature: gene Location: 801126-801437 bp Ori: AYN49322.1 Gene: trxA Feature: domain Description: thioredoxin Location: 801144-801426 bp Feature: domain Description: thioredoxin Location: 801 1 44-801 426 bp Feature: gene Location: 801516-803882 bp Ori: AYN49323.1 Gene: mutS2_1 Feature: domain Description: PRK00409 Location: 801519-803877 bp Feature: domain Description: PRK00409 Location: 801 51 9-803877 bp Feature: gene Location: 966730-967137 bp Ori: AYN49474.1 Gene: rpsL Feature: domain Description: rpsL Location: 966733-967132 bp Feature: domain Description: rpsL Location: 966733-9671 32 bp Feature: gene Location: 967304-967975 bp Ori: AYN49475.1 Feature: domain Description: PulO Location: 967322-967964 bp Feature: domain Description: PulO Location: 967322-967964 bp Feature: gene Location: 968062-969357 bp Ori: AYN49476.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968263-968881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968263-968881 bp Feature: domain Description: GIIM Note: maturase Location: 968935-969145 bp Feature: domain Description: GIIM Note: maturase Location: 968935-9691 45 bp Feature: gene Location: 969989-973660 bp Ori: AYN49477.1 Gene: rpoC Feature: domain Description: PRK00566 Location: 970004-973586 bp Feature: domain Description: PRK00566 Location: 970004-973586 bp Feature: gene Location: 973678-977292 bp Ori: AYN49478.1 Gene: rpoB Feature: domain Description: rpoB Location: 973690-977104 bp Feature: domain Description: rpoB Location: 973690-9771 04 bp Feature: gene Location: 1018399-1019814 bp Ori: AYN49512.1 Gene: pepDA_4 Feature: domain Description: PepD Location: 1018417-1019803 bp Feature: domain Description: PepD Location: 1 01 841 7-1 01 9803 bp Feature: gene Location: 1019953-1020711 bp Ori: AYN49513.1 Gene: nfrA1 Feature: domain Description: NfsA_FRP Location: 1019971-1020646 bp Feature: domain Description: NfsA_FRP Location: 1 01 9971 -1 020646 bp Feature: gene Location: 1020844-1022139 bp Ori: AYN49514.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021045-1021663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 021 045-1 021 663 bp Feature: domain Description: GIIM Note: maturase Location: 1021717-1021927 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 71 7-1 021 927 bp Feature: gene Location: 1022798-1023400 bp Ori: AYN49515.1 Feature: domain Description: FMR2 Location: 1022804-1023392 bp Feature: domain Description: FMR2 Location: 1 022804-1 023392 bp Feature: gene Location: 1023550-1023870 bp Ori: AYN49516.1 Gene: hxlR Feature: domain Description: HxlR Location: 1023568-1023862 bp Feature: domain Description: HxlR Location: 1 023568-1 023862 bp Feature: gene Location: 1245503-1246780 bp Ori: AYN49725.1 Feature: domain Description: COG3464 Location: 1245542-1246727 bp Feature: domain Description: COG3464 Location: 1 245542-1 246727 bp Feature: gene Location: 1246769-1247914 bp Ori: AYN49726.1 Gene: gadC_4 Feature: domain Description: 2A0307_GadC Location: 1246820-1247861 bp Feature: domain Description: 2A0307_GadC Location: 1 246820-1 247861 bp Feature: gene Location: 1248075-1249370 bp Ori: AYN49727.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1248276-1248894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 248276-1 248894 bp Feature: domain Description: GIIM Note: maturase Location: 1248948-1249158 bp Feature: domain Description: GIIM Note: maturase Location: 1 248948-1 2491 58 bp Feature: gene Location: 1249812-1249988 bp Feature: gene Location: 1663682-1665055 bp Ori: AYN50042.1 Gene: cycA_2 Feature: domain Description: AnsP Location: 1663706-1665047 bp Feature: domain Description: AnsP Location: 1 663706-1 665047 bp Feature: gene Location: 1665370-1667979 bp Ori: AYN50043.1 Gene: adhE Feature: domain Description: PRK13805 Location: 1665397-1667956 bp Feature: domain Description: PRK1 3805 Location: 1 665397-1 667956 bp Feature: gene Location: 1668618-1669913 bp Ori: AYN50044.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668819-1669437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66881 9-1 669437 bp Feature: domain Description: GIIM Note: maturase Location: 1669491-1669701 bp Feature: domain Description: GIIM Note: maturase Location: 1 669491 -1 669701 bp Feature: gene Location: 1670110-1670535 bp Feature: gene Location: 1670716-1671234 bp Ori: AYN50046.1 Feature: domain Description: YurZ Location: 1670824-1671049 bp Feature: domain Description: YurZ Location: 1 670824-1 671 049 bp Feature: gene Location: 1846097-1847836 bp Ori: AYN50218.1 Gene: ptsI Feature: domain Description: PtsA Location: 1846109-1847816 bp Feature: domain Description: PtsA Location: 1 8461 09-1 84781 6 bp Feature: gene Location: 1847888-1849165 bp Ori: AYN50219.1 Feature: domain Description: COG3464 Location: 1847927-1849112 bp Feature: domain Description: COG3464 Location: 1 847927-1 8491 1 2 bp Feature: gene Location: 1849899-1851194 bp Ori: AYN50220.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850100-1850718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8501 00-1 85071 8 bp Feature: domain Description: GIIM Note: maturase Location: 1850772-1850982 bp Feature: domain Description: GIIM Note: maturase Location: 1 850772-1 850982 bp Feature: gene Location: 1851440-1851841 bp Ori: AYN50221.1 Gene: spxA_2 Feature: domain Description: spxA Location: 1851446-1851827 bp Feature: domain Description: spxA Location: 1 851 446-1 851 827 bp Feature: gene Location: 1851944-1852597 bp Ori: AYN50222.1 Gene: mecA Feature: domain Description: PRK02315 Location: 1851950-1852592 bp Feature: domain Description: PRK0231 5 Location: 1 851 950-1 852592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), BaeS (COG0642), RVT-GII, MdoB (COG1368), VanZ (pfam04892), MdlB (COG1132), HTH_19 (pfam12844), RGG_Cterm (TIGR01716), GIIM (pfam08388), wecB (TIGR00236)
CelB (COG1455), SrmB (COG0513), Dps (COG0783), YfcC (COG1288), Acetyltransf_7 (pfam13508), MscS (COG0668), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed), MBG (pfam17883), Mub_B2 (pfam17966), MucBP (pfam06458)
Gram_pos_anchor (pfam00746), COG3464 (Transposase ), PRK00865 (glutamate racemase; Provisional), DUF2507 (pfam10702), thioredoxin (TIGR01068), PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed), rpsL (PRK05163), PulO (COG1989), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013)
PepD (COG4690), NfsA_FRP, FMR2 (COG3560), HxlR (pfam01638), 2A0307_GadC (TIGR00910), AnsP (COG1113), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), YurZ (COG0599), PtsA (COG1080), spxA (PRK13344)
PRK02315 (adaptor protein MecA)